Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1303 ATGAGAATGGAGTCTTCTGAATCCCAATCAAGTGCAATTTCGAATTCCAACGAGAACCTAGAATTGGGCTTTCGTTCGGCACCATCGTTTCCTAATTCCGATCACGATACTGAAACGTCGGATCTTAATCACCAGGCTGAGGCCGATGCACTTCATGTGGAGTTCCCGAACAAGTTGGTTTTGAATGATAAGGAAGGAAGGGGCGAAACTGATAAAGAGGATTTTGAATTTGATGGTAGTGAAGAAGTATGTAATAAAGCTGATGCTGAGGAATCTGATAAGGGAGATGGGTGGAGTGAAGATGACGGGAATTGGAATGAAAATGAGGACGGTgattggaatgagaatgtaaacgacggtgatgatgatgagataGGTAGAGATTTTGATGTATCTGGAGATGAAGTGGAGAGGAGGGAAGAGAGAAGCAATGGTAGAAACCACCACTACCCTTTGAGGCCCGAAGCAGACGATTGTGCATTCTATCTTAAGACTGGAACTTGCAAGTTTGGGTTCTATTGCAAGTTTAATCACCCTGTTAGGAAGAAAGATCAGGCTGGTAAAGAGAAGGCAGGAGAGAGAGATGAATCAGCTGATAGAGCAGGACAGACAGAATGCAAGTATTATCTAACGTCAGGAGGTTGTAAGTTTGGAAAAGCCTGTAAATATAACCACACAAGGGGGAAATGTTCAGCATCACCAATTCTGGAGCTTAACTTTCTTGGTCTGCCTATTCGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGTACTGGTTCTTGTAAGTTTGGAGCAAGCTGCAAATTTAATCATCCAGATCCAACAACTGTTGGAGGAGGTGATCCTTCTACTGGATTTGGTAACGGTGGACCCATATCATTACAAAGCATTTCACAGCCATCTGTACCCTCCTGGTCTTCTCAAAGAACATTAAATGAAACTGCTGCTTATGTGCCGATGGTGCTTTCACCTACTCAAGGAGTTTCTCCAAGAAGTTCTGAATGGAATGGATATCAGtttCCACCATGCAATGCTATTAATATGACTACTGTTGATGCAGCTGGTAGCAAGTTCTTTCTGAAACCTGTTAAATTTACTTTTCTCTTGGGAAGGGATGGTGGGGAGAACATTTTGTTTCATTTACTACTGTTTGACCTGTCTCTTTTTTGTAAAAAGGCACCTCTTTACCTAGCTGAAAGGAGTATGCATCCACCTCCTGCATATGTCATGAACAATTCAGCAATTGAAACAAGTATTTTTATGCATCATCAAAAGCAGATGCAGGTTGAAGAGTTTCCCGAAAGACCTGGGGAACCTGAATGCAGTTACTTCTTAAAAACTGGAGATTGCAAGTTTAAATCTAGTTGTAAGTTTCACCATCCAAGGAATCGGATCACTAAGGTACCTCCAACATGCACCCTCAGTGACAAGGGACTTCCTTTGAGGCCTGATCAGAATATCTGCACGCATTACAGTCGCTATGGTATATGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCATCACCCTCAACTATGCCTGCAATTGATCAACAATCCTCCTACTCAAACTCAGCTACTGTAGAAGTGACTGGGATGGCTGGAAATGAGGGGCAAGTGATGCAATAA 1638 0.4164 MRMESSESQSSAISNSNENLELGFRSAPSFPNSDHDTETSDLNHQAEADALHVEFPNKLVLNDKEGRGETDKEDFEFDGSEEVCNKADAEESDKGDGWSEDDGNWNENEDGDWNENVNDGDDDEIGRDFDVSGDEVERREERSNGRNHHYPLRPEADDCAFYLKTGTCKFGFYCKFNHPVRKKDQAGKEKAGERDESADRAGQTECKYYLTSGGCKFGKACKYNHTRGKCSASPILELNFLGLPIRLGEKECPYYMRTGSCKFGASCKFNHPDPTTVGGGDPSTGFGNGGPISLQSISQPSVPSWSSQRTLNETAAYVPMVLSPTQGVSPRSSEWNGYQFPPCNAINMTTVDAAGSKFFLKPVKFTFLLGRDGGENILFHLLLFDLSLFCKKAPLYLAERSMHPPPAYVMNNSAIETSIFMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSSCKFHHPRNRITKVPPTCTLSDKGLPLRPDQNICTHYSRYGICKFGPACKFDHPINPSPSTMPAIDQQSSYSNSATVEVTGMAGNEGQVMQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1303 545 PANTHER PROTEIN PHOSPHATASE RELATED 392 543 - -
Sto3g1303 545 PANTHER PROTEIN PHOSPHATASE RELATED 9 341 - -
Sto3g1303 545 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Sto3g1303 545 SMART c3hfinal6 482 509 IPR000571 GO:0046872
Sto3g1303 545 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Sto3g1303 545 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Sto3g1303 545 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Sto3g1303 545 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Sto3g1303 545 ProSiteProfiles Zinc finger C3H1-type profile. 482 510 IPR000571 GO:0046872
Sto3g1303 545 Gene3D - 480 530 - -
Sto3g1303 545 Gene3D - 414 474 - -
Sto3g1303 545 Gene3D - 195 279 - -
Sto3g1303 545 SUPERFAMILY CCCH zinc finger 480 508 IPR036855 GO:0046872
Sto3g1303 545 SUPERFAMILY CCCH zinc finger 440 465 IPR036855 GO:0046872
Sto3g1303 545 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Sto3g1303 545 MobiDBLite consensus disorder prediction 1 23 - -
Sto3g1303 545 MobiDBLite consensus disorder prediction 131 150 - -
Sto3g1303 545 Gene3D - 130 189 - -
Sto3g1303 545 MobiDBLite consensus disorder prediction 102 130 - -
Sto3g1303 545 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 179 IPR000571 GO:0046872
Sto3g1303 545 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 437 462 IPR000571 GO:0046872
Sto3g1303 545 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 272 IPR000571 GO:0046872
Sto3g1303 545 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 485 508 IPR000571 GO:0046872
Sto3g1303 545 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 225 IPR000571 GO:0046872
Sto3g1303 545 MobiDBLite consensus disorder prediction 58 101 - -
Sto3g1303 545 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Sto3g1303 545 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Sto3g1303 545 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 392 543 - -
Sto3g1303 545 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 341 - -
Sto3g1303 545 MobiDBLite consensus disorder prediction 1 150 - -
Sto3g1303 545 SUPERFAMILY CCCH zinc finger 247 273 IPR036855 GO:0046872
Sto3g1303 545 SUPERFAMILY CCCH zinc finger 153 181 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1303 Sto-Chr3 9458737 9462933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1303 426 511 C2H2 Transcription Factor Family AT5G18550 43.956 8.73e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto3g1303 zf-CCCH 1.5e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1303 3 9458737 9462933 Sto12g0703 12 4446823 4459117 ECH
Sto3g1303 3 9458737 9462933 Sto3g1303 3 9458737 9462933 ECH