Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1300 ATGAAAGAATTAGTGTGTGTGAAGTGTGCCCAGAAATGTCTTTCCCTTCAcggcaagaagaagaagaaaaactcGTCAAATGtaccttcttctttcttcaagGTCATGCTTGGCAGAGAGTTTTCGACAGTTTTGTATCTGCCTCCTAAATTTGGTCCTACAGCATCAGCCTTGGTTTATAAGAAAGCCATTATTGAGGATTGTAGTGGGCAGCAATGGGAGGTAATAGTATCAAAAGTCAACAAGTGTTTTGCTTTTAAGGAAGGATGGAATGGTTTTTCAACGGATCATGGGCTTGTAGTTGGAGATTTTCTGGTCTTCGATTACATTGGCAGCTCACATTTCATTGTTAAGATCTATGATAAATCTGGCTGTGAAATGCTGGATTTTCCCACAAGAAGAAAGccgaagaaaagaagtaggagcAGAGCTGACCTTGATGCAAGAGATGACATGTTAAATACAGCGGATGTGGAAAGAACAGAAACCCAGCACAAGGGTGTTGATGTAGAACGATCCAGAACTATCAAAGAGAATAATACTTCGGAGAAGAATAATAGCCATGGAAAAGTCCAATTTCTTGAAGACCCTTATTGCATGACAGAGCGAGACTttggagagaaagaaagagacgaCAGGAGCTCCATGTTTGATGTTTTAAGCTTTGAAATATTAAACAATTCTGGTGTTGATCGTGGAACTGGCCAATTTACAACGGGAAATGAAATAGTGGACGCAAGCATCTTTAACAAAGATCCATTACTTGAAGATATACTGGGTAGAGAGCCAACTCAGGATCCGAATGAACTTGAATTGACTGAAAGAAGCCATTTTCTTGAAGAGATAGATAAGAGGGCATATGTCAGTGATAGACATTCTTGTGGAGCTCAGACTTCTGAGCAACTTTTAGTCACATATAATGTGCAATATGAAGAGAACAGACAGAAAAGTTCCACTGTGTTCAACAGGGAAGTTCAAGAGTACAAGTTTGCTGATGTTTCAGAAACTGATGCGGTAGGGATATCAAAAGAGAGACAAAGGCATTTTGGCAATTGTCAAAACAGCCAACAGATGATTAACAAGTCCTCGGATGCTCCTATTCACCATGGTTTTTCAAAGGTCTTTCTGGGAGAGGCAGCTCAGAGTTCTCAAACAACCATTAAAGATCATGGCAGCTTGCTTAATTCGGTGAAACCTGAACCTATTTACTATGCCAACATGCCTGCCTTCGTCTTACCGATGAAGGGAGAAAACGGAGAGAAGAATGGTGCTCCTTCAGGATCCACTGAAGATACTGTGACCGATCCTTTACCATGA 1317 0.3804 MKELVCVKCAQKCLSLHGKKKKKNSSNVPSSFFKVMLGREFSTVLYLPPKFGPTASALVYKKAIIEDCSGQQWEVIVSKVNKCFAFKEGWNGFSTDHGLVVGDFLVFDYIGSSHFIVKIYDKSGCEMLDFPTRRKPKKRSRSRADLDARDDMLNTADVERTETQHKGVDVERSRTIKENNTSEKNNSHGKVQFLEDPYCMTERDFGEKERDDRSSMFDVLSFEILNNSGVDRGTGQFTTGNEIVDASIFNKDPLLEDILGREPTQDPNELELTERSHFLEEIDKRAYVSDRHSCGAQTSEQLLVTYNVQYEENRQKSSTVFNREVQEYKFADVSETDAVGISKERQRHFGNCQNSQQMINKSSDAPIHHGFSKVFLGEAAQSSQTTIKDHGSLLNSVKPEPIYYANMPAFVLPMKGENGEKNGAPSGSTEDTVTDPLP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1300 438 MobiDBLite consensus disorder prediction 422 438 - -
Sto3g1300 438 Gene3D - 24 125 IPR015300 -
Sto3g1300 438 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Sto3g1300 438 MobiDBLite consensus disorder prediction 414 438 - -
Sto3g1300 438 SMART B3_2 32 123 IPR003340 GO:0003677
Sto3g1300 438 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 6 198 - -
Sto3g1300 438 SUPERFAMILY DNA-binding pseudobarrel domain 30 125 IPR015300 -
Sto3g1300 438 CDD B3_DNA 31 121 IPR003340 GO:0003677
Sto3g1300 438 Pfam B3 DNA binding domain 32 122 IPR003340 GO:0003677
Sto3g1300 438 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 198 IPR044837 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1300 32 174 B3 DNA Binding Superfamily AT5G66980 32.653 1.00e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto3g1300 B3 4.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1300 - - qsu:112000043 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1300 3 9407072 9411293 Sto3g1300 3 9407072 9411293 ECH