Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1295 ATGGCTCAACCTCTTCTTTATAGTGTCTTCAAAGGAGAATTAGGTGATGATGAACAAGTAATAGGCCTTGGTCTCCATGTTTCATCAATGGGTACCTTCAGCCATCCTCATCATCATCTCCCTATACAGGAAACCAGAGCTTATTCTTCTCCATGGGCATCTTTTTCTGATGAAAGCAACGGAAATAGTAACAAAAGGGTAAAGAGAGTCACAAGCATACCAGGGATCTTTGAAGATTATCGAAATAGCAGTGGGATTAGTGAATGCTATAGAAGTCTAAGCAGGAGCAATAGTGTGACTAGCCTACCAAAGCTGCATTTCAGAGATCATATATGGACTTACTTTCAGAGATATCTTGCTTCAGAGGAGGCAGCAGCACAAGAGATGATGAATAATTCTGAGGTAATTCGAGCTGAAGAACAAGAACAAGATGAGAATACTGCTGATGGGATGAGGCTTGTTCAGCTCCTGATTGCTTGTGCTGAAGCTGTGGCTTGTCGCGATAAATCGCATGCTTCCACTTTACTGTCTGAACTAAGATCAAATGCTTTGGTCTTCGGCTCTTCGTTCCAGCGAGTGGCTTCTTGTTTCGTCCAAGGGCTAGCCGATCGGCTCGCGATGGTTCAGCCGGTTGGGGCTGTGGGGAGTGTGGAACCTATGATGAACATTATGGACTTTGCCTCAGAAAAAATGGAAGAAGCATTCAGATTGGTTTATGAGATTTGCCCACATATTAAGTTCGGTCACTTTGTAGCCAATGCCACAATATTGGAAGCCTTTGagggtcacagttttgtccatgTAGTGGACCTTGGGATGAGCCTTGGCCTCCCACATGGCCACCAATGGATGGGACTGATACAGACCCTTGCTAATCGCTCAGGCCAACCCATTCGCCGTCTTCGAATCACCGGCGTTGGCCTTTGCGTTGAGAAACTCCGCGTTATTGGTGAAGAACTTGAACTTTACGCCAATAACGTGGGGATTAACCTGGAGTTCTCAGTTGTAGAGAAGAACTTAGAAAATTTGCAAACTGATGATATTAAAGTATATGAAGAGGAAGTTTTGGTGGTTAATAGCATACTTCAGTTGCATTGCGTGGTGAAAGAGAGCCGTGGGGCCTTGAACTCAGTACTTCAGATGATTCATAAGCTTTCACCAAAAGTGTTGGTTATGGTTGAGCAGGACTCAAGCCACAATGGACCCTTCTTTCTTGGGAGGTTTATGGAAGCACTTCACTACTACTCTGCtatttttgactcacttgatgCTATGTTGCCTAAATATGACACCAAGAGAGCCAAGATAGAGCAGTTCTATTTTTCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGACCGGCGAGGGTGGAGCGGCACGAGAGAGTGGACCAGTGGCGAAGGAGGATGAGTAGGGCTGGGTTTCAGGGTGCACCTATGAAGATGGTGGCTCAGGCCAAGCAGTGGCTCTGGAACAATAAGCTTCTTGCTGGAAATGCTGAGTCTTTCTTCTCATGA 1518 0.4433 MAQPLLYSVFKGELGDDEQVIGLGLHVSSMGTFSHPHHHLPIQETRAYSSPWASFSDESNGNSNKRVKRVTSIPGIFEDYRNSSGISECYRSLSRSNSVTSLPKLHFRDHIWTYFQRYLASEEAAAQEMMNNSEVIRAEEQEQDENTADGMRLVQLLIACAEAVACRDKSHASTLLSELRSNALVFGSSFQRVASCFVQGLADRLAMVQPVGAVGSVEPMMNIMDFASEKMEEAFRLVYEICPHIKFGHFVANATILEAFEGHSFVHVVDLGMSLGLPHGHQWMGLIQTLANRSGQPIRRLRITGVGLCVEKLRVIGEELELYANNVGINLEFSVVEKNLENLQTDDIKVYEEEVLVVNSILQLHCVVKESRGALNSVLQMIHKLSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFSEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQGAPMKMVAQAKQWLWNNKLLAGNAESFFS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1295 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 71 499 IPR005202 -
Sto3g1295 505 PANTHER DELLA PROTEIN RGL1-LIKE 71 499 - -
Sto3g1295 505 Pfam GRAS domain family 153 490 IPR005202 -
Sto3g1295 505 ProSiteProfiles GRAS family profile. 144 505 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1295 Sto-Chr3 9374458 9376051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1295 149 478 GRAS Transcription Factor Family AT1G14920 37.092 5.56e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto3g1295 GRAS 6.7e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1295 - - pop:7463101 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1295 3 9374458 9376051 Sto3g1295 3 9374458 9376051 ECH