Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1280 ATGAAACCACACATGGCGTGCCATTACCTATTTTTTCTATCCTGcttttgtttttggtgtgtGTCTGCACAACAACAACTACAATCCTCTCAGACCCAAGTGCTTCTTCAGATTAAAAAGCAGTTGGAATACCCAAAACAGCTAGAATCATGGAAGGATCGTTGGGCTGtgttttgttcttcttcttcacatgtAAATGTCACATGCCAAGCAAATTTCGTCACTGAGCTAAGCATAATGGGAAATTctgcttcttctgcttctgctaaAGCTAGAGGAGATTTTGATGGGTTTTCTATTCCAAATCAGACTTTGTCAGAGAACTTCTCAATGGACTCTTTTGTGGCCACTCTTGCAAGACTCACAAACTTGAAAGTTCTTCGTCTTGTCTCTCTGGGGATATGGGGCCCACTTCCTGGCAAAATCCATAGGCTTCTCTCACTTGAACATTTGGACCTGAGTTCAAACTTCCTCTGTGGTTCAGTCCCTCCCAAGATTTCCACCATTGTGAATCTTCAAATTCTCAAACTTGATGATAACTTCTTCAACTCCACTATTCCCAGTTTGTTCTTGGATTCTCTCACCAATCTCACAGTTCTAGACTTGAGCAGAAACTCCTTGTCAGGTGAAATTCCCAAGCACTATGGTTCCTTAAATCACCTTCAAAATCTTGATGTTTCATTCAATGCTCTCACAGGGAAGCCTCCTTCTGAGCTCTTCTCTTTGCCCAAAATCACCTACTTGAACTTGGCATCAAACAAGTTAAGTGGGTCATTTCAAAACCATGTAATATGCAGCAGCAAGCTCAGATTTGTGGACATATCTCACAACAAGTTAATAGGTGGCTTGCCTTCTTGTCTGGGAACAGAGTCAGAAAACAGAGTGGTGGTGAAGTGTGAAGGGAATTGCTTATCCTATGAGCTGCAACATCAGCATGAGATGTCATATTGTAGTGAGGTTcatgtgaggaagaagaagaagaaggaggaggaggaggcacAGAGAAATGGGGTTTTGATTGGTGTGATTGTGGGAGTTTTTGTTGGTGttgtgattttgggtttgggatttgttgTGTTGTGTAGGAGGTTTTGTCCTAGGGGGATGTCAGAGCAGCATCTACTGCATAAATCAGTTCAAGATAGCAATGCAGCATCAGCAGTAGGATTCTCCTCTGAGATTCTGGCCAATGCAAGGTTTATTTCTCAAGCTTCAAAGTTGGGCCGAGAAGAGCTTCCCATGTGTAGACCTTATTCTTTTGAGGAGATCAAGGAAGCTACAAATAACTTCGACAACTCCACTTTTATGGGTGAGAATTTATATGGAAAGCTTTACAAAGGAAAGCTAGAGAATGGGAAGCAAGTTGCAATAAGGCTCATGCCTTTATCAAAAAAGTACTCTTTGAGGAATTTCAAACTGAGATTGGATTTGCTTGCAAAGCTTCGTCACCCTCACTTGGTAACCCTTTTGGGTCACTGCATTCATGGCGTTGTACCAAATGATCATGGCACAAATGTCTTTCTTGTATACGAGTTCGTGTCCAATGGGAGTTTTCAGACTTGCCTCTCTGGAAATAGTGGTAGCAAGGTTTTGAATTGGACAGAGAGATTAACAGTTCTAATAAGCATTGCCAAAGCTATACACTTCCTACACACTGGAATGATACCTGGTTTCTTCAAGAATCGACTCAAGACAAACAATATATTGCTTGATCAACATTGGATTGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAATCTGACAATTGTGGGGGGACAAGAGAAAGCCCTAAATCATGGGAAATGAAAAGATTAGAGGATGATGTTCATAGCTTCGGATTCATCCTACTTGAGGCACTTGTTGGACCTTCAGTATCGGCTAAACGAGAAGCAATTCTGCTGAATGTAATGGACAGTGAAGATGGGTGGAAGCAGATAGTGGATCCAATAGTGCAAGCAAAATGCAGTAAAGAATCTTTGTTTGTTGTGATTTCCATAACAAACAAATGCATTTCTCCTGAATCTTGGAGCCGACCATCCATGGAAGATGTCCTCTGGAATTTGCAGTATGCTTCTCAACTTGAGGCCACAGCTGACACAGATCAAAGATTCCATTCTGCATCACATCACTga 2142 0.3898 MKPHMACHYLFFLSCFCFWCVSAQQQLQSSQTQVLLQIKKQLEYPKQLESWKDRWAVFCSSSSHVNVTCQANFVTELSIMGNSASSASAKARGDFDGFSIPNQTLSENFSMDSFVATLARLTNLKVLRLVSLGIWGPLPGKIHRLLSLEHLDLSSNFLCGSVPPKISTIVNLQILKLDDNFFNSTIPSLFLDSLTNLTVLDLSRNSLSGEIPKHYGSLNHLQNLDVSFNALTGKPPSELFSLPKITYLNLASNKLSGSFQNHVICSSKLRFVDISHNKLIGGLPSCLGTESENRVVVKCEGNCLSYELQHQHEMSYCSEVHVRKKKKKEEEEAQRNGVLIGVIVGVFVGVVILGLGFVVLCRRFCPRGMSEQHLLHKSVQDSNAASAVGFSSEILANARFISQASKLGREELPMCRPYSFEEIKEATNNFDNSTFMGENLYGKLYKGKLENGKQVAIRLMPLSKKYSLRNFKLRLDLLAKLRHPHLVTLLGHCIHGVVPNDHGTNVFLVYEFVSNGSFQTCLSGNSGSKVLNWTERLTVLISIAKAIHFLHTGMIPGFFKNRLKTNNILLDQHWIAKLSDYGLSIISEESDNCGGTRESPKSWEMKRLEDDVHSFGFILLEALVGPSVSAKREAILLNVMDSEDGWKQIVDPIVQAKCSKESLFVVISITNKCISPESWSRPSMEDVLWNLQYASQLEATADTDQRFHSASHH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1280 713 Gene3D Phosphorylase Kinase; domain 1 394 512 - -
Sto3g1280 713 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Sto3g1280 713 PANTHER BNAA09G06560D PROTEIN 10 198 - -
Sto3g1280 713 PANTHER BNAA09G06560D PROTEIN 199 706 - -
Sto3g1280 713 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Sto3g1280 713 Gene3D Ribonuclease Inhibitor 191 339 IPR032675 -
Sto3g1280 713 Pfam Protein tyrosine and serine/threonine kinase 436 688 IPR001245 GO:0004672|GO:0006468
Sto3g1280 713 Pfam Leucine Rich Repeat 147 163 IPR001611 GO:0005515
Sto3g1280 713 Pfam Leucine Rich Repeat 196 214 IPR001611 GO:0005515
Sto3g1280 713 SUPERFAMILY Protein kinase-like (PK-like) 412 692 IPR011009 -
Sto3g1280 713 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Sto3g1280 713 ProSiteProfiles Protein kinase domain profile. 430 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1280 713 PANTHER OS07G0166700 PROTEIN 10 198 IPR045272 GO:0004714|GO:0006468
Sto3g1280 713 PANTHER OS07G0166700 PROTEIN 199 706 IPR045272 GO:0004714|GO:0006468
Sto3g1280 713 SUPERFAMILY L domain-like 29 289 - -
Sto3g1280 713 Gene3D Transferase(Phosphotransferase) domain 1 513 711 - -
Sto3g1280 713 PRINTS Leucine-rich repeat signature 148 161 - -
Sto3g1280 713 PRINTS Leucine-rich repeat signature 194 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1280 Sto-Chr3 9273081 9279599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1280 9 705 Miscellaneous Gene Families AT5G63410 52.661 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Sto3g1280 PK_Tyr_Ser-Thr 2.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1280 - - pper:18777912 746.503