Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1274 ATGGCTAGCTGTAGTTCTCTTTCATTATCATGTCCGTACAGACTCTATTGCCGCCCAAACCCTAGAAGGCGTCCCATTTTCTGCTCGGTTGGCTCTTCTGCGCTCGTAGGTGCTGATGGATCTAAAGCACCCCGCAAAAGATCAAGAAGAATAGAAGGTCCTAGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCCGATGGGCCGCCCCTCCGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATCCCTGATACAACATTTATAAGAAAATGGAGCCATAAAATTGAAGCTGTTATTATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATACCAGCATTGGATTCCCATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATCAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAATATTTAGAACAAGGAAAAAGTTTGTGGCTGGGCCATTTGAAATAGAGCCTATTAGGGTGACCCATTCTATTCCGGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAATCACCATTAGATGGGAAAACTTTTGACCGCGAAACTTTGGAGGAACTCTCTAAAGAAGGAGTAACCTTAATGATGAGTGATTCAACAAACATACTTTCTCCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTAAGGCATATTTCAGCTGCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTAGATGCAGCTTGGAGGGATGGAAAGGCACCATTTGATCCGTCCACTCTGGTGAAAGTGGAGGATATTGATGCTTATGCCCCTAAGGATCTGCTAATTGTAACCACTGGATCTCAGGCAGAGCCACGTGCTGCCTTGAATCTTGCATCATATGGAGGTAGTCATTCTTTCAAACTGACCAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGCGTGATGCAAATGCTAAACCGCATATCAGATATTGGATCATCGATAATTATGGGGAAGAACGAAGGGCTGCACACATCTGGTCATGCATATCGTGCAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACACTTTCTTCCTATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAATAGAAGAGTCCTTTCTAATGGTTTTGTATCCCTTGGAAAAGAGAATTTACAGTTGAAGTATAGTGATGGGGACAAAGCATTTGGTACATCAAGCGAACTGTTTATTGATGAAAGACTGAGAATTGCTTTAGATGGCATTATTGTGGTCAGCATGGAAATATTTCGCCCGCAAAATTTTGAGAGTCATGTTGAAAATACCTTAAaagggaagataaaaattaccACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTGGATGCACTTCATAAAGCCGCTCATGCTGCACTTTCAAGCTGCCCTGTAAATTGTCCACTGGGTCACATGGAAAGAACTGTATCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGGCCCGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCCGTTCTTGCTGATGAAGTAAAAACAAGGCTGTCAGGAAAATCTCATTTGGGTCCTAGGATATCATCATTGAGAAAAGCAGTGGACGGACATGGACATACAGAGGAAAAACAGTTCACTAACATGCCAATAAGAGGAGATGATGGCACTGATGTTGAAGATTTACCTGAGGAAGATACCACTACTCCAAGTGGAGCTGACGGCGATTTCTCTAATTCAGAGGATCAGGATGAATTTTGGAAATCATTCATTACACCATCAACTATTGAGAAGTCAATCAAAGCTAACAATGGCTATGTTCCACGAAACGAACATGAGTCCCAGTTGGAGAAAGATGGCTCTGAAGACACTGAAGAAGGTAGTTCTGAACCCAAGGCTTCAAAACCagtgaagaaaaataaatggaaACCTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAGCTGCATGAGAGGTTTCAAGTTGTTAAGGGAAGAATGGCCCTCTGGGAAGAGATATCTCAGAAGTTGTTGGCTGACGGAGTCAATAGAAGTCCAGGGCAGTGTAAATCTCTGTGGACTTCTTTGATACAGAAATATGAGGAGATCAAGAATGGGAAGACAAGCAAGAAAAGTTGGCCATATCTAGAGGACATGGAGAGAATACTGTCTGATAATGAGGCACTAGCAGCAAAATGA 2598 0.4145 MASCSSLSLSCPYRLYCRPNPRRRPIFCSVGSSALVGADGSKAPRKRSRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKIFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKTFDRETLEELSKEGVTLMMSDSTNILSPGRTISESVVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWRDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLTKEDIILYSAKVIPGNESRVMQMLNRISDIGSSIIMGKNEGLHTSGHAYRAELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNFESHVENTLKGKIKITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLGHMERTVSEVLRKLVRKYSGKRPEVIAIAIENPAAVLADEVKTRLSGKSHLGPRISSLRKAVDGHGHTEEKQFTNMPIRGDDGTDVEDLPEEDTTTPSGADGDFSNSEDQDEFWKSFITPSTIEKSIKANNGYVPRNEHESQLEKDGSEDTEEGSSEPKASKPVKKNKWKPEEVKKLIGMRGELHERFQVVKGRMALWEEISQKLLADGVNRSPGQCKSLWTSLIQKYEEIKNGKTSKKSWPYLEDMERILSDNEALAAK 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1274 865 Pfam Beta-lactamase superfamily domain 101 237 IPR001279 -
Sto3g1274 865 Gene3D - 279 429 IPR042173 -
Sto3g1274 865 PANTHER RIBONUCLEASE J 1 865 - -
Sto3g1274 865 CDD GT1 772 837 - -
Sto3g1274 865 MobiDBLite consensus disorder prediction 743 773 - -
Sto3g1274 865 SMART Lactamase_B_5a 90 287 IPR001279 -
Sto3g1274 865 CDD RNaseJ_MBL-fold 81 492 - -
Sto3g1274 865 Gene3D - 774 835 - -
Sto3g1274 865 Gene3D - 82 494 IPR036866 -
Sto3g1274 865 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 472 IPR011108 -
Sto3g1274 865 Pfam Myb/SANT-like DNA-binding domain 772 855 IPR044822 -
Sto3g1274 865 MobiDBLite consensus disorder prediction 665 689 - -
Sto3g1274 865 MobiDBLite consensus disorder prediction 38 58 - -
Sto3g1274 865 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Sto3g1274 865 MobiDBLite consensus disorder prediction 42 58 - -
Sto3g1274 865 MobiDBLite consensus disorder prediction 733 773 - -
Sto3g1274 865 MobiDBLite consensus disorder prediction 653 715 - -
Sto3g1274 865 ProSiteProfiles Myb-like domain profile. 766 830 IPR001005 -
Sto3g1274 865 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1274 Sto-Chr3 9244228 9252102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1274 760 857 Trihelix Transcription Factor Family AT2G38250 35.577 7.57e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto3g1274 Lactamase_B_2 9.7e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1274 - - lang:109326906 1370.53