Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1271 ATGGACATCCGCTCTATCTCCGGCGCGCATTTCTCCGGTTGGCGTCCTTCTACGACGTCGTCTTCTTCCTCGATATATTCTCCCGGTGACTCCAACGCTCCCTCGCAGCCCTTTGTAATCGGGGTCTCTGGAGGTACTGCATCAGGCAAGACCACTGTGTGTGATATGATTATTCAACAACTGCAAGATCATAGAGTTGTGCTCGTCTGTCAGGATTCTTTCTACCGTGGTTTAACAGATGATGAATCGAAACACGTCAGCGAGTATAATTTTGATCATCCTGACGCATTTGATACTGAGCAACTTGTAGAGTGTATCAGCAAGCTCAAATCTGGGCAGTCTGTTCAGGTTCCAATTTACGATTTTAAGAAACATCAACGGTGTTCTGACCAATCTAAACAGGTCAATGCATCTGACGTAATCATTTTGGAGGGCATATTGGTTTTACATGAACAACGTGTCCGCGACATgatgaatatgaaaatatttgttGATACAGATGCTGATGTAAGGCTTGCCCGCAGATTAAGACGTGATACTCTTGAGAGGGGTAGAAATGTACAGTCGTATTCAAAATTCGTTAAGCCTGCCTTTGAAGATTTCATTCTTCCATCCAAAAAATATGCTGATGTCATAATACCTCGTGGGGGAGAGAATGAGGTAGCAATTGATTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCGACTTTGAATGTTATCCAGTCTACGTACCAGATTAGAGGTATGCACACTCTCATTCGGGACAAGGATATATCAAAGCACGACTTTGTTTTTTATTCAGATCGGCTTATTCGTTTGGTAGTGGAACATGGTCTTGGCCACTTGCCATTTACAGAAAAGCAAGTTATCACACCTACAGGATCAATTTACACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCGTTATTCGAAGTGGTGAAAGCATGGAGAATGCATTGCGCGCATGTTGTAAAGgaataaaaataggaaaaattcTCATCCACCGTGAAGGAGGTGACGAGACCCAGCTTATTTATGAGAAGCTTCCGAAAGATATTTCAGAGAGACATGTTCTCCTTTTGGACCCGATTCTTGGCACAGGTAACTCAGCCAGCCAAGCCATTGAGCTTCTCATACGGAAGGGAGTTCCAGAGACCCAGATAATATTCCTTAACCTCATCTCTGCTCCTGAGGGAATACATCGTGTATGTACACGTTTTCCACACCTGAAAATCGTCACTTCGGAGATTGAAGTTGGACTGACTGAAGAGTTTCGAGTCATACCGGGGTTGGGAGAATTTAGTGACCGCTATTTTGGTACGGacgaattttaa 1368 0.4232 MDIRSISGAHFSGWRPSTTSSSSSIYSPGDSNAPSQPFVIGVSGGTASGKTTVCDMIIQQLQDHRVVLVCQDSFYRGLTDDESKHVSEYNFDHPDAFDTEQLVECISKLKSGQSVQVPIYDFKKHQRCSDQSKQVNASDVIILEGILVLHEQRVRDMMNMKIFVDTDADVRLARRLRRDTLERGRNVQSYSKFVKPAFEDFILPSKKYADVIIPRGGENEVAIDLIVQHIRTKLGQHNLCKIYPTLNVIQSTYQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSIYTGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHREGGDETQLIYEKLPKDISERHVLLLDPILGTGNSASQAIELLIRKGVPETQIIFLNLISAPEGIHRVCTRFPHLKIVTSEIEVGLTEEFRVIPGLGEFSDRYFGTDEF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1271 455 Gene3D - 237 452 IPR029057 -
Sto3g1271 455 Gene3D - 34 236 IPR027417 -
Sto3g1271 455 SUPERFAMILY PRTase-like 236 453 IPR029057 -
Sto3g1271 455 TIGRFAM udk: uridine kinase 38 233 IPR000764 -
Sto3g1271 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 226 IPR027417 -
Sto3g1271 455 CDD PRTases_typeI 310 425 IPR000836 -
Sto3g1271 455 CDD UMPK 39 233 IPR000764 -
Sto3g1271 455 PRINTS Uridine kinase signature 37 54 - -
Sto3g1271 455 PRINTS Uridine kinase signature 67 78 - -
Sto3g1271 455 PRINTS Uridine kinase signature 112 127 - -
Sto3g1271 455 PRINTS Uridine kinase signature 169 179 - -
Sto3g1271 455 PRINTS Uridine kinase signature 183 194 - -
Sto3g1271 455 PANTHER URIDINE KINASE 15 451 - -
Sto3g1271 455 Pfam Uracil phosphoribosyltransferase 251 452 - -
Sto3g1271 455 PANTHER URIDINE KINASE 15 451 - -
Sto3g1271 455 MobiDBLite consensus disorder prediction 12 32 - -
Sto3g1271 455 Pfam Phosphoribulokinase / Uridine kinase family 39 221 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1271 Sto-Chr3 9225659 9230291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1271 7 454 PRT Gene Family AT3G27190 77.564 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1271 K00876 - gmx:100816209 728.783