Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1269 aTGGTTTCAACGAGACGTAGTGGATCTCTCTCTGGCAACAATACCAAAAGATCTTCCTCCTCGGAAGATAAGCCTTCGTCCCCAAAGCGTCAAAAGGTCGACAATGCTGGCGCATCGGAGAAATCGACGCCGGCAGCGGAGAATTCTAAAGAATTGTGTTCTCCGGAACCGGCGGCTGATCCTGGAGAATGCGATGCTCAGATCGCTGGAGAGGGTGCTGGTGATGGTGTGAGTTCCGGCAAGGGCGATGCTGCAGCGGCTGTCCCTGTGGCGCCGCCGATCGCTGATGGTTCTTCGCCGACTTTGATGGTTAATAAGCCGAGGGGTTCTTTGTCTTCTTGGAGTATATATCAGAAGGAAACCCCAAGTTTTGAGAGTTCGACGCCATGGTGCAGGCTCCTGTCGCAGTCTGCCCAGAACCCAAACGTTCCCATTTGCAATTCGAACTTCACTATTGGTTCAAGTAGGAATTGCACCTTTCCATTGAAGGATCAGACTGTAAGTGGAATTCTATGCAGGATCAAGCATACCCAGCGCGAGGGTTATACAGATACTGTAGCATTGCTAGAAAGTACAGGCAGCAAAGGAACTGTGCTTGTTAATGGGATACCTGTCAAGAAGAACACCAACTGTGTGCTTAACTCAGGTGATGAAGTGGCCTTTGGTTTGCTGGGAAATCATTCTTACATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAAGGGCGCAGAAGTTCAGAGTGGTGTAGGGAAATTTCTGCAACTTGAAAGGAGAACGGGGGACCCTTCAGCTGTGGCTGGGGCTTCTATTTTGGCATCTCTGTCTAGCCTCAGACAAGATATCTCAAGATTGAAATCTCCATCTCATAACACCAATAAAGCTCACCAGGGAACTGACGTCTGCGCTCATTCTGCCCTTCGTGATAATACAGAAACTGAGCTTGATGGCCTGGAAGGAAATTCTGCTGCAAATGTAGGGAGTGATAAAGCAGCCAATGTTGGAGCAAGCGACAAGAATCCTCCTACAGAATGCAATCCAGATCCTAGCATGGAGGCAGGCAATGTAAAATTCTCTGGGATGAATGATTTCCTAAGGCCTTTCTTGAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTTTAAACAGGTGTTGGAAGATAGAAATGCGACGAGGGATATGCTGGCAGCATCAACCTCAAGTATGTCTGTGCGCTGTGCGGTGTTCAAAGAAGATGTTAATGCTGCAATATTGGACGGAAGAGATATAGAAGTGTCATTTGACAACTTCCCATACTATCTGAGtgaaaatacaaaaaatgtCTTGATTGCGGCTTGCTTTATTCACCTGAAGTACAAGGAACATGCAAAATACACCACAGATCTTACAACTATTAACCCACGCATTTTACTTTCAGGACCTTCAGGGTCAGAAATTTATCAAGAGATGTTGGCAAAAGCACTTGCCAATTACTTTGGGGCTAAGTTACTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCATCCAAAGAAGCTGAGCTACTCAAGGATGGGTTCATTGCTGAAAGATCCGGCGCTTGTTCCAAGCACAGTCCTACAGCCACAGACTTGGCTAGAAGCTTGGAGCCAGCAACTAGTGAACCAGATACACCTAGCTCTTCAAATGTTCCTTCTTCATATGGAAATGACTCTCAACCTAAGATGGAGATCGATACCCTACCCTCTACCTCTGGGACAACTAAAAATGGCTTGTTTAAATTAGGTGACAGGGTAAAATATAGTTCTTCTGGTGGCTTATATCAATCATCTTCAAGGGGCCCACCTAATGGAAGCCGGGGGAAGGTTGTCTTATGTTTTGATGATAATCCTGTGTCAAAAATTGGTGTAAGATTTGATAAATCCATACCTGATGGAGTTGATCTTGGAGGTGCCTGCGAGGCAGGTCAAGGATTTTTCTGCAATGTTACTGATCTTCGATTAGAAAGCAGTGGTGCAGAAGAACTGGACAAGTTACTTATCAATGCATTGTTTGAGGTTGTTTTAAGTGAGAGCAGAAGTGcaccttttattttgtttatgaaAGATGCTGAGAAATCTATTGTAGGAAATGGTGATCCATATTCGTTTAAAAGTAGACTTGAAAAGCTTCCGGACAATGTGGTTGTAATAGGCGCTCACACACACACTGACAATCGAAAGGAAAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTCGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTGCATGAGAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGACCAAGCTTTTCCCTAATAAAGTAACAATTCACATACCGCAGGATGAGACACTTCTAGCATCCTGGAAGCAGCAGCTGGATCGAGATGCTGAGACTctaaaaattaaaggaaatgtGCACCACCTGCGCACAGTTTTGGGCCGTTGCGGGATGGAATGTGATGGACTTGAGACTTTGTGCATTAAGGACTTGATGCTTACGAATGAAAATGCAGAGAAGATAATTGGTTGGGCTATAAGCCACCACCTAATGCAGAATGCTGAAGCCGATCCTGATTCAAAGCTTGTACTGTCTTGTGAGAGTGTCCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCTTGAAGAAGTCTCTGAAGGATGTTGTCACAGAAAATGAATTTGAGAAGAGGCTTCTGGCTGACGTAATTCCGCCTAATGACATTGGTGTTACTTTCGATGACATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTGCAGAGGCCTGAACTTTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGTATTCTTTTGTTTGGTCCACCTGGAACAGGTAAGACAATGCTAGCAAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCCCTGGCCAGTAAAATCGCCCCTAGTGTTATATTTGTTGATGAAGTTGACAGCATGTTGGGCAGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGTAAgatgaaaaatgaatttatgGTGAATTGGGATGGCTTACGTACAAAGGATACTGAGAGAGTACTTGTACTTGCAGCCACAAATAGGCCTTTTGACCTTGATGAGGCTGTCATCCGGAGGCTACCACGACGATTGATGGTAAATTTGCCAGATGCTCCAAACAgagcaaaaatattaaaagttattttGGCAAAAGAGGACTTGTCTCCCAATGTTGACTTGGATGCAGTTGCAAGTATGACTGATGGATATTCTGGAAGCGATCTTAAGAATCTCTGTGTGACTGCAGCTCACCGTCCAATCAAAGAAAtattagaaaaggaaaaaaagGAGCGTGCTGCTGCTGTAGCAGAAGGTAGACCTCCTCCAGAATTAAGTGGCAGCTCTGATATCCGATCTTTAAACATGGAAGACTTCAAAGATGCTCATGAAAGGGTGTGTGCAAGTGTCTCCTCTGAATCCACAAATATGTCTGAGCTCGTACAATGGAATGAGTTATACGGCGAAGGTGGTTCGAGAAGAAAGAGATCCCTCAGCTATTTCATGTGA 3714 0.4359 MVSTRRSGSLSGNNTKRSSSSEDKPSSPKRQKVDNAGASEKSTPAAENSKELCSPEPAADPGECDAQIAGEGAGDGVSSGKGDAAAAVPVAPPIADGSSPTLMVNKPRGSLSSWSIYQKETPSFESSTPWCRLLSQSAQNPNVPICNSNFTIGSSRNCTFPLKDQTVSGILCRIKHTQREGYTDTVALLESTGSKGTVLVNGIPVKKNTNCVLNSGDEVAFGLLGNHSYIFQQLNTEVAVKGAEVQSGVGKFLQLERRTGDPSAVAGASILASLSSLRQDISRLKSPSHNTNKAHQGTDVCAHSALRDNTETELDGLEGNSAANVGSDKAANVGASDKNPPTECNPDPSMEAGNVKFSGMNDFLRPFLRILAQPSCKLKLSKSIFKQVLEDRNATRDMLAASTSSMSVRCAVFKEDVNAAILDGRDIEVSFDNFPYYLSENTKNVLIAACFIHLKYKEHAKYTTDLTTINPRILLSGPSGSEIYQEMLAKALANYFGAKLLIFDSHLLLGGLSSKEAELLKDGFIAERSGACSKHSPTATDLARSLEPATSEPDTPSSSNVPSSYGNDSQPKMEIDTLPSTSGTTKNGLFKLGDRVKYSSSGGLYQSSSRGPPNGSRGKVVLCFDDNPVSKIGVRFDKSIPDGVDLGGACEAGQGFFCNVTDLRLESSGAEELDKLLINALFEVVLSESRSAPFILFMKDAEKSIVGNGDPYSFKSRLEKLPDNVVVIGAHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKTLTKLFPNKVTIHIPQDETLLASWKQQLDRDAETLKIKGNVHHLRTVLGRCGMECDGLETLCIKDLMLTNENAEKIIGWAISHHLMQNAEADPDSKLVLSCESVQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPNVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAVAEGRPPPELSGSSDIRSLNMEDFKDAHERVCASVSSESTNMSELVQWNELYGEGGSRRKRSLSYFM 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1269 1237 CDD FHA 130 232 IPR000253 GO:0005515
Sto3g1269 1237 Pfam AAA+ lid domain 1126 1161 IPR041569 -
Sto3g1269 1237 Gene3D - 574 669 - -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 1 84 - -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 1167 1186 - -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 533 588 - -
Sto3g1269 1237 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 74 369 - -
Sto3g1269 1237 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 387 1237 - -
Sto3g1269 1237 SMART AAA_5 969 1106 IPR003593 -
Sto3g1269 1237 Gene3D - 129 240 - -
Sto3g1269 1237 Pfam FHA domain 151 222 IPR000253 GO:0005515
Sto3g1269 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1210 IPR027417 -
Sto3g1269 1237 Pfam ATPase family associated with various cellular activities (AAA) 973 1102 IPR003959 GO:0005524|GO:0016887
Sto3g1269 1237 MobiDBLite consensus disorder prediction 328 347 - -
Sto3g1269 1237 CDD AAA 971 1104 - -
Sto3g1269 1237 ProSitePatterns AAA-protein family signature. 1076 1095 IPR003960 GO:0005524|GO:0016887
Sto3g1269 1237 SUPERFAMILY SMAD/FHA domain 114 231 IPR008984 GO:0005515
Sto3g1269 1237 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 74 369 - -
Sto3g1269 1237 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1237 - -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 1 21 - -
Sto3g1269 1237 Coils Coil 893 913 - -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 22 36 - -
Sto3g1269 1237 Gene3D - 931 1211 IPR027417 -
Sto3g1269 1237 MobiDBLite consensus disorder prediction 531 589 - -
Sto3g1269 1237 Gene3D - 1105 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1269 Sto-Chr3 9201278 9210812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1269 932 1181 Calmodulin-binding Proteins AT3G56690 40.078 3.37e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1269 - - aprc:113849024 1978.76