Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1253 ATGTCTATTAGAAGACCTCCACTTCCACGTCTCCTTCTCAACAATGTCTCTTGCATGAGAAATGCCCAACAAATTCTTCGTCATGTGAATGCATCTCTTCATGATGGCAGCGCACTTGTGTTAACAGGCACAAATGGTTCAGGAAAGACGACTTTCCTGCGCATGTTAGCCGGATTTAATCGTCCCTCTGCCGGTGAAGTCCTCTGGAATGGCCATGACATCACAGAATCTGGAATTTTTCATCAATATAAGCTTCAGCTCAACTGGCTCTCCCTCAAGGATGCCATTAAGGAGAAGTTTACTGTTCTTGAAAATGTTCAGTGGTTCGAAGTTCTTGAAGGAAAACACGGGAAGGCTATGCCGGCACTCGAGTTGATGGGGCTCGGAAGATTGGCTAATGAGAAGGCAAGGATGCTGTCAATGGGTCAGCGGAAAAGATTGCAACTTGCTAGACTTCTGGCAATTGATCGTCCCATTTGGCTGCTTGACGAGCCTTCGGTTGCATTAGATAATGAAGGGGTGAGGTTACTTGAGTATATAATTGCACAACACAGGAAGAATGGTGGCATTGCGATTGTTGCAACTCATTTACCCATTAAGATTGATGATGGCATGATCTTGAGGCTGCCTCCTAGGTTTCCAAGGAGGATGACCTTAGTGGATATGCTTGATCGTGCTGATATTTAG 687 0.4527 MSIRRPPLPRLLLNNVSCMRNAQQILRHVNASLHDGSALVLTGTNGSGKTTFLRMLAGFNRPSAGEVLWNGHDITESGIFHQYKLQLNWLSLKDAIKEKFTVLENVQWFEVLEGKHGKAMPALELMGLGRLANEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDNEGVRLLEYIIAQHRKNGGIAIVATHLPIKIDDGMILRLPPRFPRRMTLVDMLDRADI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1253 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
Sto3g1253 228 SMART AAA_5 35 223 IPR003593 -
Sto3g1253 228 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Sto3g1253 228 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 206 IPR005895 GO:0017004|GO:0022857
Sto3g1253 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 198 IPR027417 -
Sto3g1253 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 9 223 IPR005895 GO:0017004|GO:0022857
Sto3g1253 228 Gene3D - 9 208 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1253 Sto-Chr3 9086871 9087557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1253 24 206 Calmodulin-binding Proteins AT2G36910 26.794 2.58e-11 61.2