Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1250 ATGGCCTCAAAAGGCTCTACCCACTTTGTCGGAAATAGAAGGGCGCCATCCGCTCGAAACCACCAAGAAGGCCGGCAGCCGGGTCGAGGGCACACTAGGAAGAAGGCCTCAAACGCCCCCACCAATAACCAAGAGTTGGGCATCATCATCGATGGAGCGCACCCAACGTGGTTCAACAAGGCAACCTCAAAGTCTGTGAAAGGGGGAAGGGCTCCGGCACTGGACCTTCATAACAACCACCAGATCCAAACCTCTCAGATGCTTCCTCCTCCTCACTTCGACGCTGCTTCCCATGACGATTTTCTCGACCAAATGCTCTCTACTCTTCCCTCTTGCTCCTGGTCTGACCTCAATACCATTAACCCCAAGCCCTTCTGGTCCGACCTTCATCCCTCCAATCCCCTCCATATCCCCGCCGACATCAAGCCCCGAGACCTCTCCGACGACGCGCCGCCGCCCAACGCCGATAATGTTGCCTTTCAGTTTGACGACCAAGCAAGCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGTAGCGGCGGCGGGAGCTCGCCTTCTACTAAGTCCTCCACAGCGGCGTTCATGCTTCAGGCGCAGCAGCAGCTTCTCATGTCCCGAGGTGTCTCCGGCGTCGGCGACTCCGGCCTCCTTCCGATGCCGTTGTCGTTGGGCGGCGGAGAGTTTGATCGGCCTTCGTTCAAATCTCCGAATCCGGTTGGTGGTGAGGGTTCAGTCCAAGCTCTGTACAACGGAATCGCCGCCGGCTCACTGCATGGCGGCGGTCAAGCTTCGAATCAGACTCATCAATTTCATCAGCCTCAGGGGCAGAATTTCGGAGCTTCCGCCGCCGGGACGAACCAAGCTCCGGCAAGCGGCGCTCCGTCGCAGCAACCGAGGCAGAGAGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAGAGGACAGACAAGGCGTCGATGCTGGATGAGATCATCGACTACGTGAAGTTTCTACAGCTTCAAGTTAAGGTTCTGAGTATGAGTAGGTTAGGTGGTGCAGCTGCTGTGGCCCCCTTAGTTGCTGATATGGCATCGGAGGGAGGCGGTGCTGCTGCTGGCGGTGACTGCATCCAAGCCACCACCGCCAACGGTGGCTCCAGCAACGACAGCCTCACCATGACGGAGCACCAGGTGGCCAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCACATCTCCGTCTTGACGGTTGCTAACGGCGCTACGGATAACTCCGTCAAAGACGCAGCCTCCGTTTCCAAGCCATGA 1299 0.5812 MASKGSTHFVGNRRAPSARNHQEGRQPGRGHTRKKASNAPTNNQELGIIIDGAHPTWFNKATSKSVKGGRAPALDLHNNHQIQTSQMLPPPHFDAASHDDFLDQMLSTLPSCSWSDLNTINPKPFWSDLHPSNPLHIPADIKPRDLSDDAPPPNADNVAFQFDDQASLASKFRNHQISSGGGSSPSTKSSTAAFMLQAQQQLLMSRGVSGVGDSGLLPMPLSLGGGEFDRPSFKSPNPVGGEGSVQALYNGIAAGSLHGGGQASNQTHQFHQPQGQNFGASAAGTNQAPASGAPSQQPRQRVRARRGQATDPHSIAERTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEGGGAAAGGDCIQATTANGGSSNDSLTMTEHQVAKLMEEDMGSAMHISVLTVANGATDNSVKDAASVSKP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1250 432 MobiDBLite consensus disorder prediction 304 318 - -
Sto3g1250 432 MobiDBLite consensus disorder prediction 259 303 - -
Sto3g1250 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 346 IPR036638 GO:0046983
Sto3g1250 432 MobiDBLite consensus disorder prediction 259 318 - -
Sto3g1250 432 MobiDBLite consensus disorder prediction 1 43 - -
Sto3g1250 432 PANTHER TRANSCRIPTION FACTOR BHLH69 319 407 - -
Sto3g1250 432 PANTHER TRANSCRIPTION FACTOR BHLH69 89 318 - -
Sto3g1250 432 MobiDBLite consensus disorder prediction 137 158 - -
Sto3g1250 432 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 318 - -
Sto3g1250 432 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 319 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1250 Sto-Chr3 9044695 9052821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1250 297 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 58.209 1.39e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1250 - - jre:109000831 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1250 3 9044695 9052821 Sto3g1250 3 9044695 9052821 ECH