Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1235 ATGGGTTTGGGAGTGTTTGGTTCTTTTTTGTTTCTGACGCTTTTCTTCAAACACTTGGCGTGCCAGCAGCAACCAAATACAGATGGGTTCTTCGTATCTGAGTTCCTGAAGAAGATGGGTTTATCTTCAACTTACTCTCATTCCTACTACAACTTCTCCGATTCTTCTTTCTGTTCATGGCATGGGGTTTCCTGCGATGCCGAGAAGGAACACGTCGTTGCTTTAATGGCTTCTGGTATTGGCCTCTCTGGTCCTATTCCTGATACAACCATTGGCAAGCTAAGCAAGCTTCAAACTCTGGATCTTAGCAACAACAAAATCACTGTGCTCCCTTCAGATTTCTGGAGTTTAACCTCACTCAAGAGCCTTAACCTCTCGTTTAATCGGATTTCTGGTTCGCTGCCGAACAACATTGGGAATTTCGGTTCACTGGAAATCTTGGACTTGTCGAACAACAATCTCTCCGAAGAAATCCCAGAAGCTATAAGCTCCCTCGTACGTCTTCGTGTCCTCAAACTTAGCCAGAACAGATTTCAACAGAGCATAACTTCGGCGATTCTCAAATGTCAATCCCTAGTTTCCATCGATCTTTCATCAAATCAGCTCAATGGGACTCTTCCTGATGGTTTTGGTGCTTCGTTTCCGAATCTCAAAAGCTTGAACCTCGCAGGGAATACTATTCATGGTCGAGATTCAGACTTTTCTGGGTTGAATTCAATTACTACTCTCAATGTATCTGGAAATTCGTTTCAGGGTTCGGCCATGGGTGCGTTTCAGGGAAGCTTGGAGGTGATTGACCTAAGCAGGAACCAATTTCAAGGTCACATTTCTCAGGTTGTAGAAGTTTCTACTTCAAAAACTGGCAAGCATGGACATGCAAAGTGCCACTTTGTTGcaattgatatttttaatgGGAAAAAACTTGAAGATATTGTTCCCTCATCCCACAACTGTGATGTTCCGCATGTTAATCGTACTGACTATCAGCTGATTGATATCTCTGAAGATGGTTTTGTGAGCCTTTTGACTGACAATGGAAACACCAAGGATGATCTGAGGCTTCCCACTGATGACGCACTGCTTTCCCAGatcAAAGATGGGTTTGCTGAAGGGAAAGATCTTGTGGTTTCTGTCATGTCTTCAATGGGAGAAGAGCAGATCTGTGCCCTGAAGGACATTGGTCCTAAAAATTAA 1194 0.4296 MGLGVFGSFLFLTLFFKHLACQQQPNTDGFFVSEFLKKMGLSSTYSHSYYNFSDSSFCSWHGVSCDAEKEHVVALMASGIGLSGPIPDTTIGKLSKLQTLDLSNNKITVLPSDFWSLTSLKSLNLSFNRISGSLPNNIGNFGSLEILDLSNNNLSEEIPEAISSLVRLRVLKLSQNRFQQSITSAILKCQSLVSIDLSSNQLNGTLPDGFGASFPNLKSLNLAGNTIHGRDSDFSGLNSITTLNVSGNSFQGSAMGAFQGSLEVIDLSRNQFQGHISQVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDALLSQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPKN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1235 397 Gene3D Ribonuclease Inhibitor 184 259 IPR032675 -
Sto3g1235 397 SUPERFAMILY Nucleic acid-binding proteins 323 393 IPR012340 -
Sto3g1235 397 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 322 391 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Sto3g1235 397 SUPERFAMILY L domain-like 48 278 - -
Sto3g1235 397 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Sto3g1235 397 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 283 - -
Sto3g1235 397 SUPERFAMILY Translation proteins SH3-like domain 273 330 IPR008991 -
Sto3g1235 397 Gene3D - 266 322 IPR014722 -
Sto3g1235 397 PANTHER OS06G0301201 PROTEIN 1 283 - -
Sto3g1235 397 Gene3D - 323 396 IPR012340 -
Sto3g1235 397 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Sto3g1235 397 Pfam Leucine rich repeat 140 178 IPR001611 GO:0005515
Sto3g1235 397 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515
Sto3g1235 397 Pfam Leucine rich repeat 86 130 IPR001611 GO:0005515
Sto3g1235 397 TIGRFAM eIF_5A: translation elongation factor IF5A 264 390 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Sto3g1235 397 SMART LRR_typ_2 141 164 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 165 189 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 214 236 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 190 213 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 237 260 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 117 140 IPR003591 -
Sto3g1235 397 SMART LRR_typ_2 94 116 IPR003591 -
Sto3g1235 397 ProSiteProfiles Leucine-rich repeat profile. 143 165 IPR001611 GO:0005515
Sto3g1235 397 SMART eIF_5a_2 322 391 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Sto3g1235 397 PRINTS Leucine-rich repeat signature 97 110 - -
Sto3g1235 397 PRINTS Leucine-rich repeat signature 117 130 - -
Sto3g1235 397 CDD S1_eIF5A 323 393 - -
Sto3g1235 397 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 287 294 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1235 Sto-Chr3 8920463 8927099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1235 272 396 Eukaryotic Initiation Factors Gene Family AT1G69410 83.200 1.37e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1235 - - gmx:100807051 394.045