LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto3g1231	ATGGCTCTTCAATTCCGCACTGCTTATATTGCTCCATCGTCTCGTGTCTTCGGACGAGGGGAGCTAGTGATAGATTCAAAACAGATAGCCAAGCGATACTTGCGGCGGTATTTCATTGTCGATTTTCTATCTGTGTTGCCCTTACCTCAGATTGTGGTTTGGAGATTTCTCCAGAGATCAAAAGGTTCAGATGTATTGGCAACAAAGCAGGCCTTGCTGTTCATTATCTTATTTCAGTATGTTCCTAGATTTCTCCGGATGGTACCACTGACATCAGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGAGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGGGCTTTTTGGTACTTGTTAGCTGTCGAACGCAATGATGCATGCTGGCAGGATGCATGTGACGAAGGGTGCAATAAAAATTTCTTGTATTGTGGCAACCAGTACATGGAAGGTTATAGTGCCTGGCAAAATAAAAGTGATGATATTCTAAAGGAAAATTGCTCTGCAGATGATAATTCACCTTTTGATTATGGGATTTTCAATCAAGCATTGTCATCTAGCATTCTTTCATCCAAAAAGTTTGTGTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTAGGCCAGGGGCTTCAAACCAGCACTTATCCTGGGGAGGTTATCTTTTCAATAGCTTTAGCCATATTTGGGCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCCTCAGGCTTGAGGAAATGAGGGTCAAAAGGCGCGATTCAGAACAGTGGATGCATCATCGTTTGCTCCCACAAGATCTGAGAGAGAGGGTTAGGAAATATGATCAATATAAGTGGTTGGCAACACGTGGTGTGGATGAAGAATGTTTGGTTCAGACTCTACCCAAGGATCTTAGAAGAGATATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATTTGTGAGAGACTGAAGCCATGTCTATTCACAGAGAGTACTTACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTTTTCATCATCCGTGGTCGCCTTGAAAGTGTCACGACAGATGGTGGGAGGAGTGGCTTTTTTAACCGCAGTCTTCTTAAGGAGACTGACTTCTGCGGTGAGGAGCTTTTAACATGGGCATTGGATCCTAAATCTGGTTCTAACCTTCCCACTTCTACACGTACAGTTAAGGCATTAACTGAGGTTGAGGCTTTTGCTTTAATTGCTGAAGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTCTACTCACAGCAATGGAGGACTTGGGCTGCATGCTTTATCCAAGCCGCTTGGCGTCGGTATTCTAAGAGGAAGACTATGGAGCTTCGTCGGAAGGAAGAAGAACTTGAGGAGTCAGGAGGTCGGAACAATGTCAGTGGTGGTTCATACAGCATTGGTGCTACCTTCCTGGCTTCAAGATTTGCAGCCAATGCTCTGCGAGGTGTACATCGCAATCGGAATGCTAAAACTGCAAGGGAGTTAATGAAACTACAGAAACCCCCAGAGCCTGACTTTACTGCGGATGATGCAGACTAA	1701	0.4409	MALQFRTAYIAPSSRVFGRGELVIDSKQIAKRYLRRYFIVDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFIILFQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDACWQDACDEGCNKNFLYCGNQYMEGYSAWQNKSDDILKENCSADDNSPFDYGIFNQALSSSILSSKKFVSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPQDLRERVRKYDQYKWLATRGVDEECLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKETDFCGEELLTWALDPKSGSNLPTSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRRKEEELEESGGRNNVSGGSYSIGATFLASRFAANALRGVHRNRNAKTARELMKLQKPPEPDFTADDAD	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto3g1231	566	Gene3D	Helix hairpin bin	267	330	-	-
	Sto3g1231	566	Pfam	Ion transport protein	1	266	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Sto3g1231	566	ProSiteProfiles	IQ motif profile.	475	503	IPR000048	GO:0005515
	Sto3g1231	566	SMART	cnmp_10	339	470	IPR000595	-
	Sto3g1231	566	CDD	CAP_ED	339	470	IPR000595	-
	Sto3g1231	566	SUPERFAMILY	Voltage-gated potassium channels	3	261	-	-
	Sto3g1231	566	ProSiteProfiles	cAMP/cGMP binding motif profile.	339	423	IPR000595	-
	Sto3g1231	566	SUPERFAMILY	cAMP-binding domain-like	268	458	IPR018490	-
	Sto3g1231	566	Gene3D	-	1	264	-	-
	Sto3g1231	566	MobiDBLite	consensus disorder prediction	545	566	-	-
	Sto3g1231	566	PANTHER	NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED	1	563	-	-
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	1	10	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	118	128	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	208	225	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	234	245	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	252	261	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PRINTS	EAG/ELK/ERG potassium channel family signature	302	309	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sto3g1231	566	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	1	563	-	-
	Sto3g1231	566	Gene3D	Jelly Rolls	337	457	IPR014710	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto3g1231	Sto-Chr3	8885576	8890742	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto3g1231	1	563	Ion Channels	AT5G57940	82.218	0.0	961

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto3g1231	K05391		-	gmx:100820202	982.245

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto3g1231	3	8885576	8890742	Sto3g1231	3	8885576	8890742	ECH