Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1224 ATGGAGTTCAAGTTCCGAGCCGAGGATCACAAGTCACCCTCTTATCAATCCCTCTCTTCTTCATCCACCGTAGGATTTCCCTCCTTCTTGCGAGGTGGGTTTCCCGGTGTGCTTCCAGTACCTATCACCGACCAAATGCCACCGCCGAGGGATGAGATTCTGCGGGTGCTCGAGAAGGAGCAAATCAGGCGAGATATAATCTCCGGTGAGCTATCGAGGAGGCGAATGCTGGAGGAGGAAGTAAGAAGAGAGCTGATGGTGGAGAGGGAGATGGCATTGCGAAGGAATTTGGAAGAAAAAATGTCATATGAGGAGCGAGTGACAATGGGGTTTAGTCACAGAGTTAATGTGATTCCTCCACCATGTCCATATGGTAATAGGCCACTTGAGGAGCCAAATGCATTTCAAAACAGCAGGGTATTGAAAAGCATGCTAACTATGCCTCCTCCATTTCCACAACTTGTGGGCCCTCAAATCAAACCTTATCCTGGCACTACTAACAAGGATAAATTGATCGTCTTGtcAAGAAGCAATATACAGTTAGAGAAGATTACCATGTATGGCACTTCCAATACTGTGCCCTGCCTAGCTAAACCAGACCCAGATAATTATGAAGCGAAGCGAAAAGCTGAAATGCCACCACCTGCTGTTGAATGTGAGGAGCAATGTCCACTCGGTTTGATGAACAAACCTAAGGAGGAATGGAGTTGTGCACTGTGTCAGGTTAGTGTCACGTGTGAGAGAGGCTTCAATGACCACCTTAAAGGTAGGAAGCATAAGGCCAAGGAATCAGCACTGAGAATGCAGAAGATTGGGTTGGATGCAAAAGCAGAAGTTATAACTGAGGAGAGCCTTGTGCAGAAAAGTCCAAACAAAAATGACTCAAAGGAGCAAAATATGTCTGCAGGAAAAACAAAAGCagggaagaggaagagaaaattCAAGTTCTGGTGTGAAGCCTGCCAGGTTGGAGCATTTACTCCGACTGTGATGGAGAGCCATCAGAAGGGGAGAAAACACATCAAACGTATCAAGTTTTGTCAAAATGATCATGGAAGTGACCCACCCACATCAACCATATTATCAGAAGCAACTCCATTAACAAAAGATGCTGATACTGCTAACATAGAAACAGATCAAAAGACAACAGATGTTCTGAGCAAAGAAACCAACATCATGGAAATGGCAGAAGCAGGTTTTCCAAATTCAGTTGAATCGTCTTCAATGGCTGAATCTAGTGGTGATAGGGTGGTAGGTGAAGAAGAACTGTGA 1272 0.4434 MEFKFRAEDHKSPSYQSLSSSSTVGFPSFLRGGFPGVLPVPITDQMPPPRDEILRVLEKEQIRRDIISGELSRRRMLEEEVRRELMVEREMALRRNLEEKMSYEERVTMGFSHRVNVIPPPCPYGNRPLEEPNAFQNSRVLKSMLTMPPPFPQLVGPQIKPYPGTTNKDKLIVLSRSNIQLEKITMYGTSNTVPCLAKPDPDNYEAKRKAEMPPPAVECEEQCPLGLMNKPKEEWSCALCQVSVTCERGFNDHLKGRKHKAKESALRMQKIGLDAKAEVITEESLVQKSPNKNDSKEQNMSAGKTKAGKRKRKFKFWCEACQVGAFTPTVMESHQKGRKHIKRIKFCQNDHGSDPPTSTILSEATPLTKDADTANIETDQKTTDVLSKETNIMEMAEAGFPNSVESSSMAESSGDRVVGEEEL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1224 423 Gene3D Classic Zinc Finger 291 346 - -
Sto3g1224 423 MobiDBLite consensus disorder prediction 284 302 - -
Sto3g1224 423 PANTHER OS06G0651300 PROTEIN-RELATED 1 389 - -
Sto3g1224 423 PANTHER OS06G0651300 PROTEIN 1 389 - -
Sto3g1224 423 SUPERFAMILY beta-beta-alpha zinc fingers 313 346 IPR036236 -
Sto3g1224 423 MobiDBLite consensus disorder prediction 1 23 - -
Sto3g1224 423 MobiDBLite consensus disorder prediction 282 307 - -
Sto3g1224 423 SUPERFAMILY beta-beta-alpha zinc fingers 219 269 IPR036236 -
Sto3g1224 423 Pfam Zinc-finger of C2H2 type 235 259 - -
Sto3g1224 423 Pfam Zinc-finger of C2H2 type 316 340 - -
Sto3g1224 423 Gene3D Classic Zinc Finger 228 274 - -
Sto3g1224 423 SMART ZnF_U1_5 313 347 IPR003604 GO:0003676|GO:0008270
Sto3g1224 423 SMART ZnF_U1_5 232 266 IPR003604 GO:0003676|GO:0008270
Sto3g1224 423 MobiDBLite consensus disorder prediction 398 423 - -
Sto3g1224 423 ProSitePatterns Zinc finger C2H2 type domain signature. 237 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1224 Sto-Chr3 8837962 8840847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1224 235 386 C2H2 Transcription Factor Family AT2G19380 23.377 3.41e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1224 3 8837962 8840847 Sto3g1224 3 8837962 8840847 ECH