Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1222 ATGGAGTTCAAGTTCCGAGCCGACGATCACAAGTCACCCTCTTATCAATCCCTCTCTTCTTCATCCACCGTAGGATTTCCCTCCTTCTTGCGAGGTGGGTTTCCCGGTGTGCTTCCGGTACCGATCACCGACCAAATGCCACCGCCGAAGGATGACATTCTGCGGGAGCTCGAGAAGGAGCAAATCAGGCGAGATATAATCTCCGGTGAGCTATCGAGGAGGCGAATGCTGGAGGAGGAAGTAAGAAGAGAGCTGATGGTGGAGAGGGAGATGGCATTGCGAAGGAATTTGGAAGAAAAACTGTCATATGAGGAGCGAGTGACAATGGGGTTTAGTCACAGAGTTAATGTGATTCCTCCACCATGTCCATATGGTAATAGGCCACTTGAGGAGCCAAATGCATTTCAAAACAGCAGGGTATTGAAAAGCATGCTAACTATGCCTCCTCCATTTCCACAACTTGTGGGCCCTCAAATCAAACCTTATCCTGGCACTACTAACAAGGATAAATTGATTGTCTTGGCTAAACCAGACCCAGATAATTATGAAGCGAAGCGAAAAGCTGAAATGCCACCACCTGCTGTTGAATGTGAGGAGCAATGTCCGCTCGGTTTGATGAACAAACCTAAGGAGGAATGGAGTTGTGCACTGTGTCAGGTTAGTGTCACGTGTGAGAGAGGCTTCAATGACCACCTTAAAGGTAAGAAGCATAAGGCCAAGGAATCAGCACTGAGAATGCAGAAGATTGGGTTGGATGCAAAAGCAGAAGTTATAACTGAGGAGAGCCTTGTGCAGAAAAGTCCAAACAAAAATGACTCAAAGGAGCTAATTATGTCTGCAGGAAAAACAAAAGCAGGGAAGCGGAAGAGAAAATTCAAGTTCTGGTGTGAAGCCTGCCAGGTTGGAGCATTTACTCCGACTGTGATGGAGAGCCATCAGAAGGGGAAAAAACACATCAAACGTATCAAGTTTTGTCAAAATGATCATGGAAGTGACCCACCCACATCAACCATATTATCAGAAGCAACTCCATTAACAAAAGATGCTGATACTGCTAACATAGAAACAGATCAAAAGACAACAGATGTTCTGAGCAAAGAAACCAACATCATGGAAATGGCAGAAGCAGGTTTTCCAAACTCAGTTGAATCGTCTTCAATGGCTGAATCTAGTGGTGATAGGGTGGTAGGTGAAGAAGAACTGTGA 1206 0.4544 MEFKFRADDHKSPSYQSLSSSSTVGFPSFLRGGFPGVLPVPITDQMPPPKDDILRELEKEQIRRDIISGELSRRRMLEEEVRRELMVEREMALRRNLEEKLSYEERVTMGFSHRVNVIPPPCPYGNRPLEEPNAFQNSRVLKSMLTMPPPFPQLVGPQIKPYPGTTNKDKLIVLAKPDPDNYEAKRKAEMPPPAVECEEQCPLGLMNKPKEEWSCALCQVSVTCERGFNDHLKGKKHKAKESALRMQKIGLDAKAEVITEESLVQKSPNKNDSKELIMSAGKTKAGKRKRKFKFWCEACQVGAFTPTVMESHQKGKKHIKRIKFCQNDHGSDPPTSTILSEATPLTKDADTANIETDQKTTDVLSKETNIMEMAEAGFPNSVESSSMAESSGDRVVGEEEL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1222 401 Gene3D Classic Zinc Finger 269 324 - -
Sto3g1222 401 MobiDBLite consensus disorder prediction 1 21 - -
Sto3g1222 401 PANTHER OS06G0651300 PROTEIN-RELATED 1 367 - -
Sto3g1222 401 SUPERFAMILY beta-beta-alpha zinc fingers 291 324 IPR036236 -
Sto3g1222 401 Pfam Zinc-finger of C2H2 type 213 237 - -
Sto3g1222 401 Pfam Zinc-finger of C2H2 type 294 318 - -
Sto3g1222 401 ProSitePatterns Zinc finger C2H2 type domain signature. 215 237 IPR013087 -
Sto3g1222 401 Gene3D Classic Zinc Finger 206 252 - -
Sto3g1222 401 PANTHER OS06G0651300 PROTEIN 1 367 - -
Sto3g1222 401 SMART ZnF_U1_5 210 244 IPR003604 GO:0003676|GO:0008270
Sto3g1222 401 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Sto3g1222 401 SUPERFAMILY beta-beta-alpha zinc fingers 197 247 IPR036236 -
Sto3g1222 401 MobiDBLite consensus disorder prediction 376 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1222 Sto-Chr3 8825200 8828108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1222 212 318 C2H2 Transcription Factor Family AT5G61190 30.370 4.82e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1222 - - aprc:113874763 226.868