Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1216 ATGGAAGCCAGCGCTGGACTGGTGGCTGGGTCTCACAACCGCAACGAGCTCGTCGTGATTCACGGCCATGAAGAGCCAAAGGCTCTGAAGAACTTGGATGGTCAGGTGTGCGAGATATGCGGCGACGACGTCGGACTCACCGTCGACGGAGACTTGTTCGTCGCCTGCAACGAGTGTGGCTTTCCCGTTTGCCGCCCTTGCTATGAGTACGAAAGGAGGGAAGGTTCCCAACTCTGCCCCCAGTGCAAGACCAGATACAAGCGCCTCAAAGGGAGTCCGAGGGTGGAGGGAGATGAGGATGAGGAAGACGTGGATGATATCGAGCATGAATTCAACATTGACGACGAAAGGAACAAGCATAACCATGTGGCGGAAGCCATGCTGCATGGCAAGATGAGCTATGGAAGAGGCCCTGATGATCATCATGACATCGAAAATCCCCAGTTCCCACCGGTTATTGCCGGTAACCGCTCCCTGCCGGTGAGTGGGGAATTCCCAATATCATCTCATGGCTATGGGGATCAGATGCTATCCTCTTCGCTGCATAAACGAGTCCATCCTTATCCTGTGTCTGAAGCTGATGCAGGGTGGAAAGATAGACTGGATGACTGGAAACTTCAGCAAGGCAATTTGGGGCCTGAACAACCCGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAGCCACTATCAAGAAAAGTACCAATAGCGTCGAGCAAGATTAATCCATACAGGATGGTGATTGTGGCTCGTCTCGTCATCCTCGCATTCTTCCTCCGATATCGAATCATGAACCCGGTTCACGACGCCATTCCCCTCTGGCTAACCTCTATTATCTGCGAAATCTGGTTCGCCTTTTCGtggattctcgatcaatttcccAAATGGTTCCCCATCGACCGCGAGACCTACCTCGATCGCCTTTCGAttagGTATGAACGAGAAGGGGAGCCCAATATGCTTGCTCCTGTGGATGTGTTCGTTAGTACGGTGGATCCTATGAAGGAGCCTCCTCTGGTGACGGGGAACACGGTTCTTTCGATCTTGGCGATGGACTATCCGGTGGATAAGATATCGTGCTACATTTCAGATGATGGTGCTTCGATGTGCACATTCGAAGCTCTTTCGGAAACTGCAGAGTTTGCCAGGAAGTGGGTTCCGTTTTGTAAGAAGTTCGCCATCGAACCTCGAGCGCCGGAGATGTACTTCTCAGAGAAGATCGATTACTTAAAGGATAAAGTGCAGCCTACCTTCGTCAAGGAGCGTCGAGCTATGAAGAGAGAATACGAAGAGTTTAAAGTAAGGGTGAATGCACTGGTGGCAAAAGCCCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGGAACAACACAAAGGATCATCCTGGTatgattcaagtctttctgggTCACAGTGGAGGTTGTGATACTGAAGGAAACCTGCTTCCTCGTCTTGTCTACGTCTCCAGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGTGTCTCTGCTGTACTTACAAATGCTCCTTACATGCTGAACTTGGATTGTGATCATTATTTGAATAACAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTAATGGACCCTCAAACTGGGAAGAAAGTCTGCTATGTCCAATTCCCTCAAAGATTCGATGGTATTGATAGGCATGATCGTTATGCCAATAGGAACACTGTTTTCTTTGATATTAACATGAAAGGTCTTGATGGTATTCAAGGACCTGTATATGTGGGCACAGGATGTGTGTTCAGGAGGCAAGCTCTATATGGATACAACCCTCCCAAGGGTCCTAAACGCCCCAAAATGGTAAGCTGTGATTGTTGCCCTTGCTTTGGACGCCGCAAGAAGGTCAAGTATGGAAAGGAAGGTGCAAATGCAGAGTCTGCAATGCTACAAGGAATGGACGATGACAAGGAGATGCTGATGTCTCAgatgaattttgaaaagaaatttggGCAGTCATCTATTTTTGTGACCTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCTCTGCTTAAAGAAGCAATTCATGTAATTAGCTGTGGCTATGAGGATAAAACTGAATGGGGAACTGAGTTGGGTTGGATCTATGGGTCTATTACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCTATATACTGTATGCCCAAGAGACCTGCATTCAAGGGTACAGCACCTATCAACTTGTCAGATAGGCTGAACCAAGTGCTTCGTTGGGCACTTGGGTCCATTGAGATCTTCTTCAGCAACCATTGCCCTGCATGGTATGGCTACAAGGGAGGGAATAAGCTCAAGTGGCTAGAGCGATTCGCTTATGTCAACACTACTGTCTACCCCTTCACTTCCATTCCTCTAGTTCTTTACTGCATTCTTCCTGCCGTTTGCTTACTCACTGACAAGTTCATCATGCCACCAATAAGCACATTTGCCGGTCTCTACTTTGTTGCATTGTTCTCTTCGATCATCGCGACGGGCATCCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAATGAACAATTCTGGGTTATTGGTGGTGTATCAGCACATCTGTTTGCTGTCATACAAGGTCTTCTAAAAGTCTTAGCCGGAATTGATACCAATTTCACTGTGACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATTCCTCCAACCACTATCTTAATCATCAACATTGTTGGGGTTGTTGCTGGAATCTCGGATGCCATAAACAATGGATACCAATCCTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTCATTGTTCATCTCTATCCATTCCTTAAAGGTTTGATGGGTCGACAAAACCGAACACCCACCATTGTTGTGATATGGTCAGTGCTCTTGGCTTCTATTTTCTCTTTACTATGGGTGAGAATTGACCCGTTTGTGGCGAAGACTAAAGGGCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3108 0.4678 MEASAGLVAGSHNRNELVVIHGHEEPKALKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIDDERNKHNHVAEAMLHGKMSYGRGPDDHHDIENPQFPPVIAGNRSLPVSGEFPISSHGYGDQMLSSSLHKRVHPYPVSEADAGWKDRLDDWKLQQGNLGPEQPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRIMNPVHDAIPLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTGNTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFAIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTEGNLLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYLNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKYGKEGANAESAMLQGMDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSIPLVLYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVAKTKGPDTKMCGINC 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1216 1035 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Sto3g1216 1035 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1035 - -
Sto3g1216 1035 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1035 - -
Sto3g1216 1035 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Sto3g1216 1035 Pfam Cellulose synthase 326 1029 IPR005150 GO:0016020|GO:0016760|GO:0030244
Sto3g1216 1035 Coils Coil 424 444 - -
Sto3g1216 1035 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Sto3g1216 1035 SUPERFAMILY RING/U-box 22 109 - -
Sto3g1216 1035 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 484 617 IPR029044 -
Sto3g1216 1035 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 849 IPR029044 -
Sto3g1216 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1216 Sto-Chr3 8786111 8791251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1216 1 1035 Cell Wall Biosynthesis AT5G17420 85.356 0.0 1822