Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1198 ATGCATTCTCAGCCGGCTGACCCAAAATTGCCAGCACGCAAATTATTCTTGCACCGGTGGACTGGCCGCTATGAAGCTCATTTGTGGGACAAGAATTGCTGGAACGAATCGCAGAACAAGAAAGGAAGACAAGGAGCTTATGATGATGAGGAAGCAGCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATCCTCAATTTTCCGCTATTGAATTATGAGAAGGAACTGCAAGAAATGGAGGGCCAATCCAGGGAAGAGTACATTGGATCATTAAGGAgGAAAAGCAGTGGTTTCTCCAGGGGAGTTTCTAAATACAGAGGCGTTGCAAGACATCATCATAATGGAAGATGGGAAGCAAGAATTGGCAGAGTTTTCGGCAACAAATATCTTTATCTGGGGACTTAtgCTACCCAAGAAGAAGCCGCCACGGCTTATGATATGGCGGCTATAGAATACCGCGGCCTCAACGCCGTCACAAATTTCGACCTCAGCCGTTACATTAAGTGGCTCAAGCCCAAAATTGGCAACAACGATAATAACACCATTAATACCACCACTAATCTCACTCAATCTTACGATATTATTCCACCAAACCCTAGTCAAGAACAGGGCTTCACTAGTGGTGGATCAGAAGAAGTAGCCGCCACGCTGACTCAGCCACGACCACCAGCGGCCACGTCAGCTCTGGGGCTTCTGCTGCAGTCGTCGAAGTTCAAGGAAATGATGGAGATGACGTCGTCGTCGGCGCCGGAGACGCGGCGGCCGCAATGCCGGTTTCCGGAGGACATCCAGACGTACTTCGAGTGTGAGGATTATTCGAACAGTAATATTGGGGAAGGGGAGGATCATATTATGTTCGGTGAGCTCAACTCCTTCATGCCCGCTCCTCCTATCTTCCATTGTGATGACTTCCACACTTGA 939 0.4814 MHSQPADPKLPARKLFLHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLLNYEKELQEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPKIGNNDNNTINTTTNLTQSYDIIPPNPSQEQGFTSGGSEEVAATLTQPRPPAATSALGLLLQSSKFKEMMEMTSSSAPETRRPQCRFPEDIQTYFECEDYSNSNIGEGEDHIMFGELNSFMPAPPIFHCDDFHT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1198 312 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 289 - -
Sto3g1198 312 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 SUPERFAMILY DNA-binding domain 109 170 IPR016177 GO:0003677
Sto3g1198 312 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 17 289 - -
Sto3g1198 312 CDD AP2 109 170 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Sto3g1198 312 Pfam AP2 domain 109 160 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 ProSiteProfiles AP2/ERF domain profile. 11 74 IPR001471 GO:0003700|GO:0006355
Sto3g1198 312 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Sto3g1198 312 Gene3D AP2/ERF domain 15 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1198 Sto-Chr3 8633020 8635004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1198 13 172 AP2-EREBP Transcription Factor Family AT5G57390 69.325 1.76e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g1198 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1198 K09285 - gmx:100804555 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1198 3 8633020 8635004 Sto12g1279 12 8248576 8251161 CCT
Sto3g1198 3 8633020 8635004 Sto3g1198 3 8633020 8635004 ECH