Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1174 ATGGGTAgatgtagaagtagaaatcttgTTCAAGTTAAAGGCGAAgcctttcctcctttttttgtttcccatcCAAACCCACCTTCTTCTCcgtccaatgtgggacttggatcTGATAGTTGGGTTAATTTAAGCGACAAGGTGAGTCCAAGTGtgcttctcataatcataaTTCTAGCCATAGTTTTCTTCGTCTCTGGCTTGCTTCACCTGCTGGTTCGATTCCTCTGGAGACCCCAAAGCAGAGACCCAGATGATTATTTGGATGATGTGAGTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCACGACGCTGGGGTCGACCAATCCTTCATAGACACCCTCCCTGTCTTCCATTACAAAGCCATCATCGGATTGAAGAACCCCTTCGATTGCGCCGTCTGCTTGTGCGAGTTCGAACCCGACGACAACCTCCGATTGTTACCCAAATGTAGCCACGCCTTTCACATGGAGTGTATCGACACGTGGCTCTTGTCCCACTCCACTTGCCCTCTCTGTCGAGCCAGCTTGCTCCCCGATTTCTCTCCCACCGCCAACACCACTACCACCTTCTCTCCCTTCGTCTTTGTTCTAGAATCTGGGAGCGACACTTCCAGAGAGATTGTCCCAGAAAGAGACACCACTAATGTTGTTGGAGACCACGACCACCTCGGATCAAGCCGCATGGCTGATTTGGAATCAGATATGAGCAATCCTCAAATTGGGGAATCGCAAGAGAAAGTGGTTACTGTGAAGCTTGGAAATTTCAGGAACGTGGATAATGGCGGCGATGCAAATAGTGGCGACATTAACAGTATTGCTGATTCGAGGAGGTGTTTCTCTATGGGGTCCTTCGCTTATGTGATGGACGAGAACTCTTCGCTTCAGGTACCCGTGAGAGCCACGACGAAGAAGCAAGCGAGTAAGAAACGCGATTTGCCTTTAACCCCGGGGCACAGGTATGCGATGTCGGAGTGTGACTGCGAGTCCACTAGAGATTTCAAATTCGCAGGTTTCGAAGCTTCGAGAAGGAGTGGCGAGGGTTCTGGGATTGAGAGAAGCAGAAAAGAGAGCTTCTCAATTTCCAAGATTTGGCTTCGGGGGAAGAAAGAGAAGCCGAATGATGCGAGAGTGTTGGAATTGGAGGATGGGTCGAGAAGGGCGGTTTCGTTTCGGTTCTCATCAGCGCAGTGTAATACAATTGGAGCGAAGGGTGCGAAATCGGAGATGGATGTTGGGAAATGGGAAAACGATGAGGAAAACCAGAGTAGTTATAGCGTGGATTCGCAAGGCAGAGCACCCTCTTTTGCGAGAAGGACTCTGCTTTGGCTTACTGGAAGACAGAATAAGTTTCCGCATCAAGCTGTTGATGTTTCATAG 1386 0.4632 MGRCRSRNLVQVKGEAFPPFFVSHPNPPSSPSNVGLGSDSWVNLSDKVSPSVLLIIIILAIVFFVSGLLHLLVRFLWRPQSRDPDDYLDDVSALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPDDNLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSPTANTTTTFSPFVFVLESGSDTSREIVPERDTTNVVGDHDHLGSSRMADLESDMSNPQIGESQEKVVTVKLGNFRNVDNGGDANSGDINSIADSRRCFSMGSFAYVMDENSSLQVPVRATTKKQASKKRDLPLTPGHRYAMSECDCESTRDFKFAGFEASRRSGEGSGIERSRKESFSISKIWLRGKKEKPNDARVLELEDGSRRAVSFRFSSAQCNTIGAKGAKSEMDVGKWENDEENQSSYSVDSQGRAPSFARRTLLWLTGRQNKFPHQAVDVS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1174 461 MobiDBLite consensus disorder prediction 408 434 - -
Sto3g1174 461 SMART ring_2 134 175 IPR001841 -
Sto3g1174 461 Pfam Ring finger domain 133 176 IPR001841 -
Sto3g1174 461 SUPERFAMILY RING/U-box 113 185 - -
Sto3g1174 461 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Sto3g1174 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 404 - -
Sto3g1174 461 CDD RING-H2_PA-TM-RING 133 176 - -
Sto3g1174 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Sto3g1174 461 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 19 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1174 Sto-Chr3 8451448 8452961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1174 40 453 C3H Transcription Factor Family AT2G18650 47.564 2.26e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1174 - - lja:Lj4g3v2023880.1 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1174 3 8451448 8452961 Sto3g1174 3 8451448 8452961 ECH