Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1160 ATGGGAATTGAGAGAGGAGGCCTCAAGGCCTTACGTGGCGGCTGGAGCGTGGCCGCTAAGCCATGCGACTCCTGCAAATCGGCGGCTTCCGCGGTTTTCTGCCGAGCCCATTCCGCCTTCTTATGCATGCCTTGTGATGGCCGACTCCATAAGCTGGCTCCTTCCCGCCACGCGCGCGTCTGGATGTGCGAGGTGTGCGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCCCTCGCCCGCCGCCACGAGCGAGTCCCCGTGGAGCCCTTCTTTGACTCGGCCGAGTCGGTGGCCAAATCCTCTGCCGCCGCCGCTGCTTTTAACTTCCTGGTCCCGACGGATAATAATGGGATTTCCTCTGCGGATGGGTTCCACCAGGACGATCCCGAAACGGCGCCGTGGCTGCTCCCCAACCCCAATTTCAACTCCAAGCTCATGGAGGCTCCGGAAATCAAGTCCGGAGACATGTTCTTCTCAGAAGTGGATCCTTTTATGGATTTCGATTACTCCAATTCTTATCATCAGAACAATAATAACGACAACGCCGGAAACGACAGCGTTGTGCCAGTTCAAAACAAACCTGCTCCGCCTCCATTGATGAATCACTCCGACAGTCCTTGCTTCGATATCGATTTTTGCAGATCGAAGCTTTCTTCATTTAGCTACCCAAGCCAAAGCGTGTCATCGTCTTCTGTTGATGTTGGGGTGGTACCAGACTCGGTGACAGAGATTTCCTACTCTTTGGGTCGAAACATAAGCGGCAGCTCCGAATCAGTGGGAATCGGGTTGGCGGGAAACAATCAGGCGACCCAACTGGGTGGGTTGGATCGGGAAGCGAGGGTGTTGAGATACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAAACCATACGGTACGCTTCGCGAAAGGCATACGCGGAGACCCGGCCCAGGATCAAGGGCCGGTTCGCGAAACGGACCGAGACGGACTCGGAGATGGACCGGCTCTATAGCCCCCTGGGCACGGGGGGTCTGATGGTGGATGCCCAATACGGCGTCGTGCCGTCATTTTAA 1107 0.5691 MGIERGGLKALRGGWSVAAKPCDSCKSAASAVFCRAHSAFLCMPCDGRLHKLAPSRHARVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVAKSSAAAAAFNFLVPTDNNGISSADGFHQDDPETAPWLLPNPNFNSKLMEAPEIKSGDMFFSEVDPFMDFDYSNSYHQNNNNDNAGNDSVVPVQNKPAPPPLMNHSDSPCFDIDFCRSKLSSFSYPSQSVSSSSVDVGVVPDSVTEISYSLGRNISGSSESVGIGLAGNNQATQLGGLDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETDSEMDRLYSPLGTGGLMVDAQYGVVPSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1160 368 Pfam CCT motif 295 337 IPR010402 GO:0005515
Sto3g1160 368 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Sto3g1160 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 368 IPR045281 GO:0009909
Sto3g1160 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 368 - -
Sto3g1160 368 SMART bboxneu5 17 55 IPR000315 GO:0008270
Sto3g1160 368 SMART bboxneu5 58 105 IPR000315 GO:0008270
Sto3g1160 368 CDD Bbox1_BBX-like 63 105 - -
Sto3g1160 368 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Sto3g1160 368 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Sto3g1160 368 CDD Bbox1_BBX-like 21 62 - -
Sto3g1160 368 ProSiteProfiles Zinc finger B-box type profile. 17 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1160 Sto-Chr3 8308670 8309923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1160 1 368 C2C2-CO-like Transcription Factor Family AT5G57660 54.787 5.37e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto3g1160 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1160 - - cam:101510742 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1160 3 8308670 8309923 Sto3g1160 3 8308670 8309923 ECH