Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1142 ATGAGCTGTGCCACCATAGAGGCCAGTTCATTCTGCTTATCCCCTTCATCTTTCTCAGATTCCAAGTTCACACCACTGCTAGATCCTGCCATATTCACAGCAGCTCTCTTACCACCCTTCTTTGTCTCCTTCAAGTCTTTAAACCAATCCGGCTGCAGGTTGGTTGAGGCAGAAGACGATCGATCTCATCCCATGCTCTACGCAACTTCCCATATTCGCTTTCCATATCTTCGTTCTAGTTCATCCCAGATTTTCTTGGCAGAAACACAGAATATGAGTGTATCTGCAATTTGCTTATCGATGGAATTAGTAATCCATGCTTTCACCATGGAGTCCACCTTTTTCCACCGTCGGTGTTGTGTACCATCTGTAGGTTCCAGTAAGGTTCCATCGATGAATCCCATCTTCTCTTTAGCCTCAAGAGAATTTTTGATGGCCAAGCTCCATGTGTGCTTCCTCCATTTGAACCAGTGTTACTGCTTGAATCACTCATTTTCGTCTAAAACTGAGAAAATGGCAGAGATGCAGAACGGAAGAAGCTTGCAGATAGAGAAGGACAAGATACTGGAATTTTGTACTCAGCAATTAAcctcctctgataccatgatAAAAGCAATCAGAGTAAGAACAACTGAGAAATTCATGCATTGCTCATTGATGCTCAGTGATGATATGAGTCATTTGCGTGGTAACACTTGGGTTGTTGATGATGAAGAGGAGAAGCAGGTGAATCTAGATCTTGTGCTTGAGCCATCAGCAGCAGctaattataattacaataggaatatgaatatgaataggAAGAAGATGGAGTCAGGGAAGAAGGTGTTCTCATGCAACTACTGCCAGAGAAAGTTCTACAGCTCGCAAGCACTGGGAGGTCATCAGAATGCCCACAAGCTCGAAAGAACACTGGCCAAGAAGAGCAAGGATAATCTCATCACTCACACTCACACTGCTTCTGCGTCTTCACAATTATCTACTCTTCATCACCATTCCAATTATTATAATTACCACTACCATACCTTCCCTCATTCTATTTTCAAACCTGCCTCCTCCTCCCATTATGCCTCTCAAACTACCACTCTTGATGAGGAGGAGGATACTATTGGTGGCCACCTTGATTTGTCCCTCAGgctttga 1143 0.4156 MSCATIEASSFCLSPSSFSDSKFTPLLDPAIFTAALLPPFFVSFKSLNQSGCRLVEAEDDRSHPMLYATSHIRFPYLRSSSSQIFLAETQNMSVSAICLSMELVIHAFTMESTFFHRRCCVPSVGSSKVPSMNPIFSLASREFLMAKLHVCFLHLNQCYCLNHSFSSKTEKMAEMQNGRSLQIEKDKILEFCTQQLTSSDTMIKAIRVRTTEKFMHCSLMLSDDMSHLRGNTWVVDDEEEKQVNLDLVLEPSAAANYNYNRNMNMNRKKMESGKKVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSKDNLITHTHTASASSQLSTLHHHSNYYNYHYHTFPHSIFKPASSSHYASQTTTLDEEEDTIGGHLDLSLRL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1142 380 Gene3D Classic Zinc Finger 253 334 - -
Sto3g1142 380 PANTHER BNAC02G44440D PROTEIN 240 380 - -
Sto3g1142 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
Sto3g1142 380 PANTHER ZINC FINGER PROTEIN JAGGED 240 380 IPR045320 GO:0003700
Sto3g1142 380 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Sto3g1142 380 SUPERFAMILY beta-beta-alpha zinc fingers 273 304 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1142 Sto-Chr3 8172181 8175572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1142 242 380 C2H2 Transcription Factor Family AT5G57520 45.324 8.45e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1142 - - csv:101209710 100.523