Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1141 ATGCTCCTCCTCCGCAACTGCCCCGAATTCGTCCTCGCCTTCCTCGGCGCCTCCTTCCGCGGCGCCGCCGTCACCATGGCCAACCCCTTCTTCACTCCCGCCGAGCTCGCCAAGCAAGCCGCCGCCTCCAAGCCGAAGCTCATCATAACGCAAGCGGCTTACGTGGACAAGATCAACGACTTCGCGGTATCCAACGGCGTCCTCGTGATGTGCATTGACGACGACTACTCGTCGTCTGACGAAGGCGTTTTGCGTTTCTCTCAGCTCACCCAATCTAACGAATCCGAAATTCCAGCGGTGAAAATCAACCCAGCGGATGATGTCGTGGCGCTCCCTTATTCGTCCGGCACCTCGGGGGTACCCAAGGGGGTTATGCTAACGCACAAGAATCTCGTGACCACGGTGGCCCAGCTCGTGGACGGGGAAAACCCGAACCAGTACACCCGACCCGAGGACGTGCTCCTGTGCGTGCTTCCGTTGTTTCATATCTACGCGCTTAACTCCATTATGCTGTGTGGGATACGAGCCGGAGCAGCTATTGTGATAATGAGTAAATACGAGACGACGAGGGTTTTGGAGGTGATTGAGAAATACAAGGTGACGGTGGTGTCGATTGTGCCTCCTATACTATTGGCCATGGTGAAGAGTGAGGATGTTGAGCGATACGACCTGTCGTCTATTAGGATGGTCGTCACCGGGGCCGCACCTGTCAGCGTGGAGCTTGAAGGAGCTCTCAGGGCTAAGCTTCCGCATGCCAAATTTGGACAGGGATATGGAATGACGGAGGGTGGTCCTCTAGCGATAAGCTTAGCGTTTGCGAAGGAAGCGATGGAGGTAAAATCGGGTGCGTGCGGGTGCGTGATAAGAAACGCGGAGATGAAAATTGTGGACATTGAGACGGGAGCTTCGCTTCCGAGGAACAAATCGGGTGAAATTTGCATTAGAGGCAACCAAGTGATGAAAGGTTACCTAAATGACCCGGAGGCCACAAAGAGAACAATAGACAAAGAAGGATGGCTTCACACGGGTGACATAGGATACATAGACGATGATGACCAGCTCTTCATTGTAGATCGATTGAAAGAAATTATCAAGTACAAAGGCTTCCAAGTTGCACCCGCTGAGCTGGAGTCTTTACTTATCGCTCATCCTCACATTTCTGACGCTGCTGTTGTACCTATGCAAGATGAAGCCGCGGGAGAGGTTCCGGTTGCGTTCGTTGTCAGATCTAACGGCTCTAAAATATCGGAACATGAAATCAAACAATACATTGCCCAACAgGTGGTGTATTACAAGAGAATTCATAAAGTAATATTCACGGATACTATCCCTAAAGCAACCTCTGGCAAAATTTTGCGAAAGGACTTAAAAGCAAGGCTCGCAGCAGCTGGTGTGGTCAATTAG 1404 0.5157 MLLLRNCPEFVLAFLGASFRGAAVTMANPFFTPAELAKQAAASKPKLIITQAAYVDKINDFAVSNGVLVMCIDDDYSSSDEGVLRFSQLTQSNESEIPAVKINPADDVVALPYSSGTSGVPKGVMLTHKNLVTTVAQLVDGENPNQYTRPEDVLLCVLPLFHIYALNSIMLCGIRAGAAIVIMSKYETTRVLEVIEKYKVTVVSIVPPILLAMVKSEDVERYDLSSIRMVVTGAAPVSVELEGALRAKLPHAKFGQGYGMTEGGPLAISLAFAKEAMEVKSGACGCVIRNAEMKIVDIETGASLPRNKSGEICIRGNQVMKGYLNDPEATKRTIDKEGWLHTGDIGYIDDDDQLFIVDRLKEIIKYKGFQVAPAELESLLIAHPHISDAAVVPMQDEAAGEVPVAFVVRSNGSKISEHEIKQYIAQQVVYYKRIHKVIFTDTIPKATSGKILRKDLKARLAAAGVVN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1141 467 Pfam AMP-binding enzyme 2 366 IPR000873 -
Sto3g1141 467 Pfam AMP-binding enzyme C-terminal domain 375 450 IPR025110 -
Sto3g1141 467 Gene3D - 1 360 IPR042099 -
Sto3g1141 467 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 460 - -
Sto3g1141 467 SUPERFAMILY Acetyl-CoA synthetase-like 2 462 - -
Sto3g1141 467 ProSitePatterns Putative AMP-binding domain signature. 111 122 IPR020845 -
Sto3g1141 467 Gene3D - 361 463 IPR045851 -
Sto3g1141 467 CDD 4CL 1 456 - -
Sto3g1141 467 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1141 Sto-Chr3 8151973 8155040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1141 1 428 Monolignol Biosynthesis Gene Families AT1G51680 68.822 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1141 K01904 - gmx:100810418 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1141 3 8151973 8155040 Sto3g1141 3 8151973 8155040 ECH