Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1120 ATGTCAGGGAATCTGGTGGGAAAAGGAGGGTATGCGGAGGTTTACAAGGGGAAATTAGAAGAGGGAGAGAAAATTGCAGTGAAGAGGCTCACAAAAACTTGCAGTGATGAGAGGAAAGAGAAGGAGTTTTTGATGGAGATTGGTACAATAGGACATGTGCGTCATCCTAATGTTTTGTCGCTCCTAGGTTGTTGTATCGACAATGGCCTTTACCTCGTCTTCCAGCTCTCCTCTAAAGGCTCTGTTGCGTCTCTTCTTCATGATGAGAATTTAGGACCTATGGAATGGGAAACAAGGTACAAGATAGCTGTAGGGACTGCACGTGGCCTTCACTACTTGCACAAGGGATGCCAGAGAAGGATAATACACAGAGACATCAAGGCTTCCAACATTCTATTGACTGAAGATTTTGAGCCGCAGATATCTGATTTTGGGTTGGCAAAATGGCTTCCCTCTCAGTGGACTCATCATTCAATTGCGCCAATAGAAGGCACATTTGGGCACTTGGCTCCAGAGTATTATTTACATGGAATTGTGGATGAGAAGACGGATGTATTTGCATTTGGAGTGTTCTTGCTGGAAGTAATATCTGGGAGGAAACCTGTGGATGGGTCACACCAGAGCTTACACAACTGGGCAAAGCCAATATTGAAAAAAGGGGAGATAGAAAAGGTAGTAGATCCAAGGCTAGAAGGTGCGTACGATGAGAGAGAGTTAAAAAGACTTGGATTTGCAGCTTCTTTGTGCATCCGAGCATCTTCTACTTGGCGACCTTCCATGACTCAGGTATTAGAGGTACTTGAAGAGGGGGACATAGATAAAGATAAATGGAAAATGCcagaggatgaagaagaagaagaggaggaggaagagcaATTCTGGGGTTTTGAGGATCTGGAATATGAATATGACACTTCAATGTCTCTTCCTGATTCCATTGGAAGTACTTCAGACCAATGA 960 0.4208 MSGNLVGKGGYAEVYKGKLEEGEKIAVKRLTKTCSDERKEKEFLMEIGTIGHVRHPNVLSLLGCCIDNGLYLVFQLSSKGSVASLLHDENLGPMEWETRYKIAVGTARGLHYLHKGCQRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHNWAKPILKKGEIEKVVDPRLEGAYDERELKRLGFAASLCIRASSTWRPSMTQVLEVLEEGDIDKDKWKMPEDEEEEEEEEEQFWGFEDLEYEYDTSMSLPDSIGSTSDQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1120 319 SMART serkin_6 3 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1120 319 ProSitePatterns Protein kinases ATP-binding region signature. 6 28 IPR017441 GO:0005524
Sto3g1120 319 PIRSF ILK 2 284 - -
Sto3g1120 319 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1120 319 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Sto3g1120 319 Pfam Protein tyrosine and serine/threonine kinase 4 208 IPR001245 GO:0004672|GO:0006468
Sto3g1120 319 PANTHER OS04G0654600 PROTEIN 2 299 - -
Sto3g1120 319 Gene3D Transferase(Phosphotransferase) domain 1 78 293 - -
Sto3g1120 319 CDD STKc_IRAK 6 269 - -
Sto3g1120 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Sto3g1120 319 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Sto3g1120 319 PANTHER OS08G0249100 PROTEIN 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1120 Sto-Chr3 7928251 7931590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1120 2 288 Receptor kinase-like Gene Family AT1G60800 43.390 2.50e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sto3g1120 PK_Tyr_Ser-Thr 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1120 - - aip:107642468 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1120 3 7928251 7931590 Sto12g1341 12 8821613 8823736 CCT
Sto3g1120 3 7928251 7931590 Sto3g1120 3 7928251 7931590 ECH