Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1115 ATGGAGTGGGACAGCAATTCGGATCTAAGCGGGGACGAGGAGGAGACCTTCGTGCTCAACGATGGTGGCCCAATTCCGTTCCCTGTCGAGAATTTGCTCCAAACGGCTCCCTGTGGGTTCGTCGTCACTGATGCGCTGGAGCCTGACCACCCAATTATTTATGTCAATTCTGTCTTCGAGATGGTCACTGGGTATCGGGCAGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTAGATTCAACTGTAGTTTCAGAAATTAGGAGATGCCTCGATGAGGGTATTGAATTCCAAGGTGAGTTGCTGAACTTTAGAAAAGATGGTTCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTTTGGGTCCTTCAATCAAGGAATCTGCTAAATCATCGGATCAATTTCGTTCTGTGCTTTCGTTGTTGAGTCCTCTAGCTGTAGGGGACCGGAATGTATCTCGTGGAGTTTGTGGGATACTGCAATTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCCCGCTTAACTCCAAGAGATATTGCGTCTATTGGCTCTGTCTGCTGGCGACTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAAACCACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGGTGGGGTCGGCTGGCTAGGGAGTTGACCACTCTTGAAGCTGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTGCTAGATCTTAACTCGAAAAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGTCACACAATTTCTTGTGTTAATGGTTCTAATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAACGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCTACTTGGCGTGAAATATCTGGATTGGCACCTCCTCTTCCAAGATCATGGCATAGTTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCAGATTCTGGAGTACTTTTGAGTGACACATTCCTCCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTAGCATGGACCCCACCTTCTCGTCTTGGCCACACACTTTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTTTGGCCAAGAGTGGGCCCCTGCGTTTCCGTTCCAGTGATGTATTCACCATGGATTTAAGTGAGGAGGAACCGTGTTGGAGATGTGTAACCGGGAGTGGCATGCCTGGTGCCGGGAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCTGGTGGGAGGATCTTAATATTTGGGGGATCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTTTACATCCTGGACCCTACAGAGGAGAAGCCTACATGGCGAATTCTGAACGTCCCCGGGCGCCCCCCGAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGAGAGGAGTGGATGCTAAGCGAGCTCCACGAGCTTTCTCTGGCAAGTTCTGTCATTTAG 1833 0.4877 MEWDSNSDLSGDEEETFVLNDGGPIPFPVENLLQTAPCGFVVTDALEPDHPIIYVNSVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVLGPSIKESAKSSDQFRSVLSLLSPLAVGDRNVSRGVCGILQLSDEVLSLKILARLTPRDIASIGSVCWRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSKNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1115 610 PANTHER ADAGIO PROTEIN 1-LIKE 1 609 - -
Sto3g1115 610 Gene3D - 475 608 IPR015915 GO:0005515
Sto3g1115 610 CDD PAS 36 146 IPR000014 -
Sto3g1115 610 Pfam F-box domain 198 240 IPR001810 GO:0005515
Sto3g1115 610 Gene3D - 194 242 - -
Sto3g1115 610 Pfam Galactose oxidase, central domain 358 405 - -
Sto3g1115 610 Pfam Galactose oxidase, central domain 294 344 - -
Sto3g1115 610 SUPERFAMILY F-box domain 190 259 IPR036047 GO:0005515
Sto3g1115 610 TIGRFAM sensory_box: PAS domain S-box protein 32 146 IPR000014 -
Sto3g1115 610 Pfam PAS domain 37 147 IPR000014 -
Sto3g1115 610 Pfam Kelch motif 518 565 IPR011498 GO:0005515
Sto3g1115 610 Pfam Kelch motif 451 502 IPR011498 GO:0005515
Sto3g1115 610 Gene3D - 272 474 IPR015915 GO:0005515
Sto3g1115 610 Gene3D PAS domain 22 158 - -
Sto3g1115 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 147 IPR035965 -
Sto3g1115 610 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Sto3g1115 610 SUPERFAMILY Galactose oxidase, central domain 281 595 IPR011043 -
Sto3g1115 610 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1115 Sto-Chr3 7889050 7897487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1115 33 148 AGC Kinase Gene Family AT5G58140 33.621 2.56e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1115 K12115 - tcc:18589282 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1115 3 7889050 7897487 Sto3g1115 3 7889050 7897487 ECH