Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1071 ATGGAAGATAATTGCAACACAGGGCTATGTCTTGGACTGGGGATGGAAGGTTATACGCCAAAGAATAAGAAGCATCACCAAGTGGGTTTGCTGAATCTATCCTTCGAGCTTTGTCCCAAATTAAAcagagatgatgatgatcataACAGTAGCAACGACAACTGCAGAAAGAAACTCAGGCTCACCAAGGACCAATCCGCCTTGCTCGAACATAGCTTCAAGCTCCACACCACTCTTAATCCTGCTCAGAAACAAGCACTGGCTGAGCAATTGAATCTGAAGCCGAGACAAGTGGAAGTTTGGTTTCAGAACCGAAGAGCAagGACGAAGTTGAAGCAAACGGAGGTAGAGTGTGAGTTGTTAAAGAAATGGTGTGAGAATCTAACGGATGAGAATCGACGATTGAAGAAGGAATTGCAGGAATTACGATCATCATCGCCTTTGTACATTCAACTTTCTAAACCCCCCACCATGTGTTCCTCCTGTCACAAACTACTCTTCAAAcaccaatcataa 516 0.4147 MEDNCNTGLCLGLGMEGYTPKNKKHHQVGLLNLSFELCPKLNRDDDDHNSSNDNCRKKLRLTKDQSALLEHSFKLHTTLNPAQKQALAEQLNLKPRQVEVWFQNRRARTKLKQTEVECELLKKWCENLTDENRRLKKELQELRSSSPLYIQLSKPPTMCSSCHKLLFKHQS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1071 171 Gene3D - 47 118 - -
Sto3g1071 171 SUPERFAMILY Homeodomain-like 46 113 IPR009057 -
Sto3g1071 171 Pfam Homeobox associated leucine zipper 112 144 IPR003106 GO:0006355|GO:0043565
Sto3g1071 171 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Sto3g1071 171 SMART halz 112 152 IPR003106 GO:0006355|GO:0043565
Sto3g1071 171 SMART HOX_1 54 116 IPR001356 GO:0003677
Sto3g1071 171 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Sto3g1071 171 CDD homeodomain 56 113 IPR001356 GO:0003677
Sto3g1071 171 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 44 165 - -
Sto3g1071 171 Coils Coil 118 145 - -
Sto3g1071 171 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Sto3g1071 171 PANTHER - 44 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1071 Sto-Chr3 7507408 7508140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1071 37 165 Homeobox Transcription Factor Family AT4G37790 65.414 3.96e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto3g1071 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1071 K09338 - lang:109339930 214.157