Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1069 ATGTTGTTCTTGGATTCCTTCATCAGAAGAATGAGTGTTCGAGGCACTAATTCGACAACAACAAAACATATCATACTGCTGTTCCACCCAACAGAAGAAGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTTGAGCTCATCACTTTCCTCGATCTCTATAGATACGACCCTTGGGAACttccaggtttggCAACAATTGGGGAGAAAGAATGGTACTTCTATGTTCCTCGAGATCGGAAGTACCGGAACGGAGATCGGCCGAACCGAGTGACAACGTCAGGGTATTGGAAGGCGACAGGTGCTGATAGAATGATTCGAACAGAAAGCTTGAGATCCATTGGGCTGAAGAAAACCCTAGGTGAGATATCTCTTTGCCGAGTGTACAAGAGAGGAGGGAGTGGTGTGGAAGACCACACCTCCCTCCCTCGTTGTCTGCCTACATCCTCCAGACCTTCCCATCATCATTCCAACAAGAATAAGCACAACAACATTCATCTGCAGCCACAACCTCCAACCGATCAAAATCAAGTAGCTCCTGATATTATAACTACTAACAAAatcatgaataataataataattattatcaaGTAGTTGATGAGGGAATTAGAAGCACTACTACTAATCATGCCAATTACAAAAACTACCGTTTGGGATtagtatcatcatcatcatcagttggaatggaggaagaagaagccttaatgctcatgcaccctcaaCCACAACCACTAGCAgcctcctccttcttccccaCAGCCTCTTCTTCCTTCCCTTCCAACAACAACAATAGTTCAATCATGCCGGATCATCATCTCAATAGGCTACCACTTACTAATTATAactgcaataataataataataatgctcctcttcctcttcctcttcctcttcctcctcaaaCTCACACCCATCAATCTCTTCATCATCCCAACCTGCAATTCTCTAATCTGCTATTGCACTCACAGTCACAGCAACAGTCAATGCTGCCTCTCAATTCGCTTCCAACTTCCTTAATCTCTGACAGATTCTGGGACTGGAATCTAATCCCTGATGCAACCAACCGAGACTTCATGTCCTTCaaATCTCTTGTGAGGTTAGAAATTCCTATTTCCTACTATGGTTACTTTAAATCAGAATTCAGAAATCAGATCCCATCTGATGAAATTCCAAAGAACTTTTGGGTGATTGGCACCATACCACCAAATCTGCTTCTTTATGGTTACGAAGCAAATTTCTTGTGTGGTATCCCACACAAGAAAGGCAACTACCCAACTACCAACTGA 1305 0.3762 MLFLDSFIRRMSVRGTNSTTTKHIILLFHPTEEELVEFYLRRKVEGKPFNVELITFLDLYRYDPWELPGLATIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTESLRSIGLKKTLGEISLCRVYKRGGSGVEDHTSLPRCLPTSSRPSHHHSNKNKHNNIHLQPQPPTDQNQVAPDIITTNKIMNNNNNYYQVVDEGIRSTTTNHANYKNYRLGLVSSSSSVGMEEEEALMLMHPQPQPLAASSFFPTASSSFPSNNNNSSIMPDHHLNRLPLTNYNCNNNNNNAPLPLPLPLPPQTHTHQSLHHPNLQFSNLLLHSQSQQQSMLPLNSLPTSLISDRFWDWNLIPDATNRDFMSFKSLVRLEIPISYYGYFKSEFRNQIPSDEIPKNFWVIGTIPPNLLLYGYEANFLCGIPHKKGNYPTTN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1069 434 Gene3D NAC domain 31 127 IPR036093 GO:0003677|GO:0006355
Sto3g1069 434 MobiDBLite consensus disorder prediction 140 184 - -
Sto3g1069 434 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 127 365 - -
Sto3g1069 434 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 126 - -
Sto3g1069 434 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
Sto3g1069 434 SUPERFAMILY NAC domain 28 127 IPR036093 GO:0003677|GO:0006355
Sto3g1069 434 Pfam No apical meristem (NAM) protein 28 126 IPR003441 GO:0003677|GO:0006355
Sto3g1069 434 MobiDBLite consensus disorder prediction 169 184 - -
Sto3g1069 434 PANTHER OS01G0888300 PROTEIN 28 126 - -
Sto3g1069 434 PANTHER OS01G0888300 PROTEIN 127 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1069 Sto-Chr3 7480412 7491174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1069 28 176 NAC Transcription Factor Family AT2G02450 63.536 2.48e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g1069 NAM 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1069 - - gmx:100792622 265.003