Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1055 ATGGAGAATATTGGTGAAGAGTATAGGCATTACTGGGAGACCAACATGTTCTATCAAACCGAAGAGCTTgacagCTGGGGGTTGGACGAGGCCTTCTCTGGTTACTACGATTCGAGCTCGCCGGACGGCGCGGCGTCATCGGCGGCGTCTAAGAACATTGTGTCCGAGAGGAATCGGAGGAAGAAGCTGAACGAGAGGCTTTTTGCTCTTAGAGCGGTGGTCCCCAACATTAGCAagATGGACAAGGCTTCGATAATTAAGGATGCTATTGAGTACATCCAACACTTGCACGAGCAAGAGAAGAGTATTGAAGCAGAGATAACAGAGCTGGAATCTGGGAAACAGATGAAGAAAACTTGTAACGATATCGACTTCGAGCAGGACCTCCCCGTTCTGCTCAggtccaagaagaagaaaacagagCAGCAGCAACAACTTTACGATTCCGTCATCAATTCTAGAAATTTCCCAATTGAAGTGCTTGagCTGAGGGTAAAATACATGAGAGAGAAGACAGTAGTGGTGAGCTTGACATGCAGTAAACGGACGGACACAATGGTGAAACTGTGCGAAGTGTTCGAATCACTCAAGCTCAAGATCATTACAGCCAATATTACTTGTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATCGAGGCagatgaagaagagagagatcATCTGGAGATAAGAATCCAAGCAGCCATTGCAGCTCTTAATGATCCTCAAAGCCCTATGAGCATCTGA 747 0.4324 MENIGEEYRHYWETNMFYQTEELDSWGLDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKSIEAEITELESGKQMKKTCNDIDFEQDLPVLLRSKKKKTEQQQQLYDSVINSRNFPIEVLELRVKYMREKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITCFSGRLLKTVFIEADEEERDHLEIRIQAAIAALNDPQSPMSI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1055 248 SMART finulus 53 102 IPR011598 GO:0046983
Sto3g1055 248 Gene3D - 44 113 IPR036638 GO:0046983
Sto3g1055 248 Coils Coil 218 238 - -
Sto3g1055 248 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Sto3g1055 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
Sto3g1055 248 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 242 - -
Sto3g1055 248 PANTHER TRANSCRIPTION FACTOR BHLH35 1 242 - -
Sto3g1055 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1055 Sto-Chr3 7327617 7332207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1055 1 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.514 6.31e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g1055 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1055 - - gmx:100817978 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1055 3 7327617 7332207 Sto3g1055 3 7327617 7332207 ECH