Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1053 ATGACGGACCAGACCGAGTTCAGCGTTCTGTGCAGCCTCTTCACATGGACTCAGAGAAGCAAGTCACCGGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATTCCTTTTGCAAAGACAAGAATTATTTCAGCGCTATTCGGTTAATTCTTCCCAATCTCGATCGAGAGCGAGGCACCTATGGTCTCAAGGAGTCCGTTCTCGCCACCTCTCTCATTGATGCTCTTGGCATGTCCAGGGAGTCTGAGGACGCCCTTCGCCTCATCAATTGGCGCAAAGGAGGTGCGAAGACCGGCGTCAATGCCGGAAATTTCGCTCTTGTAGCTGCTGAGGTGCTGCAACGTAGGCAAGGGATGGCATCTGGTAGATTAACAATAAGGGAGTTAAATGACTTGCTTGATAAACTGGCTTCAAGTGAAAACAGGGCTGAGAAGACTTCGGTTCTTTCTACCCTTATCCAAAAGACAAATGCGCAGGAAATGAAGTGGATTATCATGATAATCCTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCAGATGCCGAGGATTTGTTTAATGTAACTTGTGACTTAAAATTAGTTTGTGAAAAGCTAAAGGATAGGAATCAACGTCATAAGCGGCAGGATATTGTAGTTGGAAAAGCTGTGCGTCCTCAACTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAAAAGCTGCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGAGATCGAATCCAAATACATAAAAATGGAAGGGATATATATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCGACATGCAATGTCAGACATTATAGTACAAAATATTGTTGTCGACAGGTGTATTCTTGATGGTGAGATGTTGGTTTGGGACAAATCCTTGAaccgttttgctgaatttggtTCAAATCAGGAAATAGCTAAGGCAGCAAGGGATGGGCTTGATAGTGATAGACAGTGGCAAGACGTTGCATTTGATATCCTTTATGTTGGAGACACTAGCGTAATTCACCAAAGCTTGAAGGAAAGACATGAACTTCTCCGTAAGGTTGTGAGGCCCTTGAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACACTGATAATCCCACTGGAGAACCTTGTTGGTCATTCGTTGCTCGTAATGTTGATGAAGTTGAGAGATTTTTTAAAGAAACCATAGAAAATAGGGATGAGGGGATTGTTTTAAAAGACCTTGGTTCCAAATGGGAACCTAGTGACCGTGGTGGGAAGTGGATGAAATTAAAGCCTGAGTACATACAAGCTGGTTCTGATCTGGATGCACTTATCATAGGTGGCTATTATGGCTCTGGACGAAGAGGGGGGGAGGTTGCTCAATTCTTGGTGGGCCTTGCAGAACATCCATCCCCAAATACACATCCCAAGCGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTAGATGCTGTAGTAACCAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAAGAAGAGGCCACCAAGTTTTTACCAAGTTACTAATCATTCAAAAGAACGGCCTGATGTGTGGATCGATAGCCCTGACAAATCGATAATTCTCACTATAACCAGTGATATTCGAACAATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGAATTGATAGGGTGAGATATGACAAACCCTGGTATGAATGCCTTGATGTGCAATCATTTATAGAATTAGTGCATTCCAGCAATCGCACCACAAAGGGGGGTACAGAATATGGCCACAAGCAGGATAGTAAATCAAAACGCACCAAATCCTCTAAAGGGGGAGAAAAGAAAAGCATGTCCATTGTCCCTTCTCATTTAATACGGACTGATGTTTCCAGTATTAAGGGGGACTCCTTAATATTCTCAAATATGATGTTTTATATTGTTAATGTGCCTCCATCTCATTCTCTTGATTCCTTGCATAAGATTGTTGCTGAAAATGGGGGAACTTTCTCAATGAATTTGAATAAAACAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCAGCAAAACGTTGTGGTGATATCATCCATTATAGTTGGGTAATAGATTGCTGTACGCAAAAGAAGCTCATCCCCTTACAGCCAAAATACTACCTCTTCCTTTCTGAACTCACAAAGAAGAAGTTACATGAAGAAATTGATGAGTTCTCAGACTATTACTACTTGGATCTTGATTATGCAGACATCAAGCAGGTAATAGCATtaCTCTTAAGCAATATTCAAGCATCAAGAGAAGATATGCGCACTATTGACCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTCACTTTCATGGGTGCTCCATTTATTTCTACACTTTGAAGCCACCTTTGAAAGGAGATTGGGAAGTTTTATTGGAACTTTCTATGAGAAGACTGCAGTTTGAAATCCTCATGAGTGGTGGCAAAGTTACTGATAGTCCCACTTATGCTACCCATTTAGTGGCCTTGTCAGTTCCAGGATATAATGTAGACTTTGAAGAAATGCTAAGAAGTTTTACTTCAGTAGACAGAAAACTTCTTTCAAGTAAGAGGTTGCATGTAGTCGGACCCCAGTGGCTCGAAGATTCTTTGGAACATGGCCAAAGATTACCAGAAGAAACATATACATTGAAGCTCAGTGGAATAGAAGAATTAACTTCTGAAGAGTGCAAACATGACTTGGCTTTAGATAGTCATTTTGGTGAAGATAATGTGGAAGACCCGAAGTTGTCACTTGTCTCTGAAAAGGGACTCAAGCAGAGAAGTGCAGAAGCTGCTGATGAAGAACCTATGGCCTTGATGTCTGAGACAGGTGGAAAAAGGAAACGTGGAAGACCTGCTGGCCAAGGAAGTAAGAAAGTAAAAACTGCCACCAAGCAGACTCGAAGAGCACGACCACGTATTGGAAAAAGGCCTGCTAAAATAAGTGAATATGAAACAGATGAAAGTAGTTCTCATGATGAAAAACCATGCGAGGATGAGATTGACAATAGAGAAGTCAGTCTTGACTCAGGCAAGAAGCCTTTAGTAACCCAAGAGACAGAGAAAAGCACAGTAGTCCCAGAGACTGAAGTATTACAATGTTCTGATCCATCTAGGGGAGACGATGCAGTTAACCAAGAGATTTTGAAGGACGTTGAATATATAAAACAGCCTGtcccaaaaattgaaatgaCTGAACGGCACGATGATCAAAACAGTAAGACCGAGAAACCCCAAATGATGGCTGATCCAATACAGGCAATGTTATTTGACATGATTCCTAGCCTTGCGGCGAAGAAAGTCGATGAAACTAGGAATTGTAATAATGTAGAAGATGAGAAGCCACCACCTGAGGACTCCAGTGCAGATCCtcccaagaaaaagaaagtcaGCTACAAGGATGTTGCTAGTGAGCTGCTCAAGGATTGGTAG 3525 0.4111 MTDQTEFSVLCSLFTWTQRSKSPAKKRSKFRKFLDSFCKDKNYFSAIRLILPNLDRERGTYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGVNAGNFALVAAEVLQRRQGMASGRLTIRELNDLLDKLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIVVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGRDIYFFSRNFLDHSEYRHAMSDIIVQNIVVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQWQDVAFDILYVGDTSVIHQSLKERHELLRKVVRPLKGSLEILIPNGGLNTDNPTGEPCWSFVARNVDEVERFFKETIENRDEGIVLKDLGSKWEPSDRGGKWMKLKPEYIQAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAEHPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIDSPDKSIILTITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNRTTKGGTEYGHKQDSKSKRTKSSKGGEKKSMSIVPSHLIRTDVSSIKGDSLIFSNMMFYIVNVPPSHSLDSLHKIVAENGGTFSMNLNKTVTHCVAADSKGFKFEAAKRCGDIIHYSWVIDCCTQKKLIPLQPKYYLFLSELTKKKLHEEIDEFSDYYYLDLDYADIKQVIALLLSNIQASREDMRTIDHYRKKYCPKDKWSHFHGCSIYFYTLKPPLKGDWEVLLELSMRRLQFEILMSGGKVTDSPTYATHLVALSVPGYNVDFEEMLRSFTSVDRKLLSSKRLHVVGPQWLEDSLEHGQRLPEETYTLKLSGIEELTSEECKHDLALDSHFGEDNVEDPKLSLVSEKGLKQRSAEAADEEPMALMSETGGKRKRGRPAGQGSKKVKTATKQTRRARPRIGKRPAKISEYETDESSSHDEKPCEDEIDNREVSLDSGKKPLVTQETEKSTVVPETEVLQCSDPSRGDDAVNQEILKDVEYIKQPVPKIEMTERHDDQNSKTEKPQMMADPIQAMLFDMIPSLAAKKVDETRNCNNVEDEKPPPEDSSADPPKKKKVSYKDVASELLKDW 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1053 1174 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Sto3g1053 1174 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto3g1053 1174 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1044 1062 - -
Sto3g1053 1174 PANTHER DNA LIGASE 4 2 915 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Sto3g1053 1174 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Sto3g1053 1174 ProSiteProfiles ATP-dependent DNA ligase family profile. 340 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sto3g1053 1174 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sto3g1053 1174 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Sto3g1053 1174 SUPERFAMILY BRCT domain 799 915 IPR036420 -
Sto3g1053 1174 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Sto3g1053 1174 ProSiteProfiles BRCT domain profile. 807 914 IPR001357 -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 937 1075 - -
Sto3g1053 1174 Gene3D BRCT domain 666 777 IPR036420 -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1007 1040 - -
Sto3g1053 1174 Gene3D - 444 604 IPR012340 -
Sto3g1053 1174 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1090 1107 - -
Sto3g1053 1174 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Sto3g1053 1174 Gene3D BRCT domain 803 914 IPR036420 -
Sto3g1053 1174 SUPERFAMILY BRCT domain 288 740 IPR036420 -
Sto3g1053 1174 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Sto3g1053 1174 MobiDBLite consensus disorder prediction 937 963 - -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1135 1174 - -
Sto3g1053 1174 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Sto3g1053 1174 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Sto3g1053 1174 Coils Coil 126 146 - -
Sto3g1053 1174 SMART BRCT_7 818 904 IPR001357 -
Sto3g1053 1174 SMART BRCT_7 653 729 IPR001357 -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 606 633 - -
Sto3g1053 1174 CDD OBF_DNA_ligase_IV 448 592 - -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1090 1115 - -
Sto3g1053 1174 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Sto3g1053 1174 MobiDBLite consensus disorder prediction 610 629 - -
Sto3g1053 1174 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 207 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto3g1053 1174 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Sto3g1053 1174 MobiDBLite consensus disorder prediction 1131 1174 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1053 214 601 Core DNA Replication Machinery Family AT1G08130 26.733 6.11e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1053 K10777 - gmx:100816002 1738.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1053 3 7300415 7315065 Sto3g1053 3 7300415 7315065 ECH