Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1045 ATGGCTGCTAAGATGGAAAACACAAAGGAAGAAGAATTATATGAGAATGATCTGACCAATCTCAAGGACACAGAGCTTACACTGGGCTTGCCAGGAACACATCAGAAAAGTGTtagaaacaacaacaacaaaaggcTTTTCACAGAATCCTCTCAAGACCACTCTGCAACATCAACTCAATCATCTAATGCTCCAAAGTTGAACTCAGATTCTGCCTCTCCTCCCAAGGCAAAGATAGTGGGGTGGCCACCAATTCGATCCTACAGGAAAAACAGCTTgaaggagaaagaagaagagtgtGGTGGGATCTATGTGAAAGTAAGCATGGATGGAGCTCCTTACCTTagaaagattgatttgaggGTTTACACTGCCTATTCTCAACTCCTCAAAGCACTTGAGAATATGTTCAACTTAACCATAGGGAGGTACTCTGAAAGAGATGGTTATGAAGGATCAGAATTTGCTCCTACATACCAAGACAAGGATGGTGATTGGATGCTAGTAGGAGATGTTCCATGGGaTATGTTCATCAGTTCTTGCAAAAGGCTAAGGATCATGAAAGCTTCAGAAgctaagggtttaggttgtGGCAAGCTTCACAAAAGCAGCATGGGAGGCATCATGGAAAGTATAATCATCCGTGAAATCGATGCTATTCACCGTTGTGATGAATTCAGTGGCAACAAGCACCCTAATGGGAGTGAATAA 711 0.3797 MAAKMENTKEEELYENDLTNLKDTELTLGLPGTHQKSVRNNNNKRLFTESSQDHSATSTQSSNAPKLNSDSASPPKAKIVGWPPIRSYRKNSLKEKEEECGGIYVKVSMDGAPYLRKIDLRVYTAYSQLLKALENMFNLTIGRYSERDGYEGSEFAPTYQDKDGDWMLVGDVPWDMFISSCKRLRIMKASEAKGLGCGKLHKSSMGGIMESIIIREIDAIHRCDEFSGNKHPNGSE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1045 236 MobiDBLite consensus disorder prediction 1 19 - -
Sto3g1045 236 PANTHER AUXIN-INDUCED PROTEIN 12 196 - -
Sto3g1045 236 Pfam AUX/IAA family 34 196 IPR033389 -
Sto3g1045 236 MobiDBLite consensus disorder prediction 1 20 - -
Sto3g1045 236 MobiDBLite consensus disorder prediction 28 78 - -
Sto3g1045 236 SUPERFAMILY CAD & PB1 domains 101 188 - -
Sto3g1045 236 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Sto3g1045 236 MobiDBLite consensus disorder prediction 30 70 - -
Sto3g1045 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 196 IPR003311 GO:0005634|GO:0006355
Sto3g1045 236 Gene3D - 96 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1045 Sto-Chr3 7225716 7229069 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1045 91 195 B3 DNA Binding Superfamily AT2G46530 35.849 5.68e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto3g1045 AUX_IAA 1.5e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1045 K14484 - cit:102607547 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1045 3 7225716 7229069 Sto3g1045 3 7225716 7229069 ECH