Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1043 ATGGCCGCTTTGGGATTGAACCACAAAGACACTGAGCTCTGTCTGGGATTGCCCGGGGTAGAAACTCCCAACAAGCCCACCGGAAAGAGAGGGTTTGACGAAACTAGTGGCGTGATGGATCTCAAGCTCAATCTTCAATCCAAAGCTAAGCCACCTGCAGCTAAGGCACAAGTAGTGGGATGGCCACCAGTGAGATCGTACAGGAAGAATGTAATGgcagaaaaggaaaaggaaaaggtgAAGAGTAATTATGGCGAGACAGGAGGAGGACTAGTGAAGGTTAGCATGGAAGGTGCTCCATACCTTCGCAAGGTGGACTTGAAATTGTACCAAACCTACCACCAATTATCTGATGCATTGGCCAAATTGTTCAGCTCCTTCACCATGGTGGGTGATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCTCAACACCTCTGACTATGTCCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTCGGTGATGTCCCTTGGCAGATGTTTGTTGAGTCATGCAAGCGTCTTCGGATTATAAAAGGATCGGAAGCCATTGGCCTTGCGCCAAGAGCCATGGAAAAATGCAAAAGCAgaagctaa 624 0.4615 MAALGLNHKDTELCLGLPGVETPNKPTGKRGFDETSGVMDLKLNLQSKAKPPAAKAQVVGWPPVRSYRKNVMAEKEKEKVKSNYGETGGGLVKVSMEGAPYLRKVDLKLYQTYHQLSDALAKLFSSFTMVGDGAQGMIDFMNESKLMDLLNTSDYVPTYEDKDGDWMLVGDVPWQMFVESCKRLRIIKGSEAIGLAPRAMEKCKSRS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1043 207 SUPERFAMILY CAD & PB1 domains 85 186 - -
Sto3g1043 207 ProSiteProfiles PB1 domain profile. 89 194 IPR000270 GO:0005515
Sto3g1043 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 200 IPR003311 GO:0005634|GO:0006355
Sto3g1043 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 49 IPR003311 GO:0005634|GO:0006355
Sto3g1043 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 49 200 - -
Sto3g1043 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 4 49 - -
Sto3g1043 207 Pfam AUX/IAA family 44 198 IPR033389 -
Sto3g1043 207 Gene3D - 84 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1043 Sto-Chr3 7216930 7218373 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1043 64 197 B3 DNA Binding Superfamily AT4G23980 29.104 1.64e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto3g1043 AUX_IAA 2.2e-74 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1043 K14484 - pop:7473446 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1043 3 7216930 7218373 Sto3g1043 3 7216930 7218373 ECH