Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1015 ATGGCGACCCAGATGAGCAAGAAGAGAAAGTTCGTAGCCGATGGAGTTTTCTTCGCTGAGCTGAACGAGGTTTTGACCAGAGAACTAGCCGAGGATGGATACTCGGGTGTCGAGGTTAGGGTTACTCCAATGCGGACTGAGATCATTATCAGAGCCACTCGTACACAGAATGTTCTTGGTATGTGCTTTCATTCAAATGTAGGTGAGAAGGGAAGGAGAATTAGAGAGCTGACCTCAGTTGTACAGAAGAGATTTAAGTTTCCCGAAAATAGTGTGGAACTGTATGCCGAGAAAGTCAACAACAGGGGCCTTTGTGCTATTGCTCAGGCAGAATCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCTTGCTATGGTGTTCTAAGATTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTTATTGTTAGTGGAAAATTGAGGGCCCAGCGAGCCAAATCCATGAAGTTCAAGGATGGATACATGATTTCTTCCGGACAGCCCGTCAAAGATTACATTGACTCTGCTGTAAGACATGTACTTCTAAGACAGGGTGTTCTTGGTATTAAAGTCAAGATCATGCTTGATTGGGATCCTAAAGGGAAGCAGGGTCCCAAAACTCCCCTCCCCGATATTGTCACAATCCATCCTCcaaaagaagaggaggaataCAGCCGGCCTGCGGCCATTTTGGCAACTGATATTGAGGTTCCTGTTCCTGTTGCTTGA 738 0.4566 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGMCFHSNVGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYSRPAAILATDIEVPVPVA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1015 245 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 240 - -
Sto3g1015 245 ProSitePatterns Ribosomal protein S3 signature. 155 191 IPR018280 -
Sto3g1015 245 SUPERFAMILY Ribosomal protein S3 C-terminal domain 101 199 IPR036419 -
Sto3g1015 245 Gene3D - 101 227 IPR036419 -
Sto3g1015 245 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 107 IPR009019 GO:0003723
Sto3g1015 245 CDD 40S_S3_KH 15 103 - -
Sto3g1015 245 Gene3D - 1 100 IPR015946 -
Sto3g1015 245 Pfam KH domain 20 101 IPR004044 GO:0003723
Sto3g1015 245 Pfam Ribosomal protein S3, C-terminal domain 114 196 IPR001351 GO:0003735|GO:0006412
Sto3g1015 245 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 218 IPR005703 GO:0003735|GO:0006412|GO:0015935
Sto3g1015 245 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1015 Sto-Chr3 6972207 6974651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1015 1 241 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.647 2.02e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1015 K02985 - gmx:100795581 442.58