Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1008 ATGGGAAGAAGCCCCTGCTGCTCGAAGGAGGGCTTGAACAGAGGAGCCTGGACCGCTCACGAAGACAAAATCCTCACCGATTACATTACCCTCCACGGCGAAGGCAGATGGCGAAACCTCCCCAAAAGAGCAGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTTCGATGGTTGAACTATCTCAGACCAGATATTAAGAGAGGCAACATTTCCCCCGATGAAGAAGACCTTATTATCAGGCTTCACAACCTCTTGGGAAACAGATGGTCTCTAATAGCAGGGAGGCTTCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACCAATTTGGGGAAAAAACTGCACAATAAAGATAAGGACCCTCATCtccaaaaaaacaataataataataagaatgatgttggtttttatgGTGAGGAAGCAGCCCCAAACACAAACACTCTGAATTCCCCTCCTGTGTCTGTGGTTCGTACAAAGGCCACCAAGTGCTCCAAGGTCTTCATAAACCCCCCAGTCCCACCTCTCAACTCCATGGGCAACCAAACGACGCCGTACGAGGCCGGGTGGTTGTCGTTTGAGGGAATTACAGAGAAAGAGATGAGGTGGTCGAGCACGACGACAGAGGATTATTTGCTGGGGGATTTCAACGTGGGAGAGCTCTGCTTGTCCGATCTTCTCAACTCCGAAATgtgcaacaacaacaacaacagcgACTCCTTGTCGCCTTCGTGTTGCGATCAGCCTTTCGTATTCTCCGATGACATTCTCAATGATTGGACTCAAACCAACGCTGCTCATCCCGAACCTCACTCTTTCACTTCCTTCCTTCAATCTACTCACTCTGACCAATGGCTGCcccccattaattaa 876 0.4509 MGRSPCCSKEGLNRGAWTAHEDKILTDYITLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKLHNKDKDPHLQKNNNNNKNDVGFYGEEAAPNTNTLNSPPVSVVRTKATKCSKVFINPPVPPLNSMGNQTTPYEAGWLSFEGITEKEMRWSSTTTEDYLLGDFNVGELCLSDLLNSEMCNNNNNSDSLSPSCCDQPFVFSDDILNDWTQTNAAHPEPHSFTSFLQSTHSDQWLPPIN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1008 291 Gene3D - 14 66 - -
Sto3g1008 291 SMART sant 66 114 IPR001005 -
Sto3g1008 291 SMART sant 13 63 IPR001005 -
Sto3g1008 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto3g1008 291 PANTHER TRANSCRIPTION FACTOR TT2 1 243 - -
Sto3g1008 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto3g1008 291 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Sto3g1008 291 CDD SANT 16 61 IPR001005 -
Sto3g1008 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto3g1008 291 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 243 - -
Sto3g1008 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto3g1008 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto3g1008 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto3g1008 291 CDD SANT 71 112 IPR001005 -
Sto3g1008 291 Gene3D - 70 137 - -
Sto3g1008 291 MobiDBLite consensus disorder prediction 115 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1008 Sto-Chr3 6919334 6920287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1008 1 174 MYB Transcription Factor Family AT2G47460 55.172 2.49e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto3g1008 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1008 K09422 - gmx:100781908 321.242