Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0995 ATGGGCGGAGACGCTACCAACTGGGACGAAAATGGTTATAGGGAAAGCATATTGAAGGAAAGAGATATTCAAACCCGAACCGTTTTTAGAACCGCCTGGGCtccaacactaaaccctaaccctgacaCCCTCCTTCTTGCCTCCAGCGACGGATCCATCGCCTCCTACTCTATCCCTTCCTGCATCTCCAACCTCCCATTTGGTTTTATCAATACAAAGACACAAATATTATTCGCTGAACCAAGTTGCTTCTTTCAAGGGCACGATGGACCTGCATATGATGTCAAATTTTATGGTGATGATGAAAATGCTCTGTTATTGAGTTGTGGTGATGATGGTCGGATTCAAGGATGGAGATGGAAGGAACTTGTGGGCTCAAAAGATTCTTCATCTTTGCCTGGAAATAAAATCAAGCCATTACTTGATCTGGTGAATCCTCAGCAGAAAGGTCCTTGGGGTGCCCTTTCACCTATCCCTGAGAACAATGCCATTGCTGTTGATAGtaagGGGGGATCTGTTTTTTCTGCTTCTGGTGATTCCTGTGCATATTCTTGGGATGTGGAAACTGGTAAAGTAAAAATGGTATTTAAGGGGCACTTGGACTACTTGCATTGTTTAGTTGCCCGCAACTCATCCAGTCAGATTATAACTGGCTCAGAGGATGGGACTGCACGAATTTGGGATTGCAAAAGTGCAAAGTGTATCAAAGTGATTGATCCAGCTAAAGATTTGAAGTCAAAAGGATTTGTTTCGTGGATTAGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGCTATGGTCGAAACATATCACTTTGGAACCTACCTGCTTCAGAGTGCGTATCAACGATTTCGATGGGTGCCTCTGTACAGGACATGGTATTTGACAATAATCAAATACTGGCAGTTGGGGCAAATCCTCTACTTAATCGCTTCGACATGAATGGTGTGATCCTTTCACAAATACAGTGCGCTCCTCCGTCAGCATTTTCTGTATCCTTACATCCATCAGGGGTCATCGCAGTTGGTGGTTATGGTTGTCTTGTGGATGTTATCTCCCAATTCGGAAGCCACATGTGCACATTCCGCTGCCAAAGTGTTTAA 1113 0.4313 MGGDATNWDENGYRESILKERDIQTRTVFRTAWAPTLNPNPDTLLLASSDGSIASYSIPSCISNLPFGFINTKTQILFAEPSCFFQGHDGPAYDVKFYGDDENALLLSCGDDGRIQGWRWKELVGSKDSSSLPGNKIKPLLDLVNPQQKGPWGALSPIPENNAIAVDSKGGSVFSASGDSCAYSWDVETGKVKMVFKGHLDYLHCLVARNSSSQIITGSEDGTARIWDCKSAKCIKVIDPAKDLKSKGFVSWISCVALDASESWLACSYGRNISLWNLPASECVSTISMGASVQDMVFDNNQILAVGANPLLNRFDMNGVILSQIQCAPPSAFSVSLHPSGVIAVGGYGCLVDVISQFGSHMCTFRCQSV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0995 370 SMART WD40_4 318 356 IPR001680 GO:0005515
Sto3g0995 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Sto3g0995 370 SMART WD40_4 231 277 IPR001680 GO:0005515
Sto3g0995 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Sto3g0995 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Sto3g0995 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 367 IPR042626 -
Sto3g0995 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Sto3g0995 370 Pfam WD domain, G-beta repeat 248 277 IPR001680 GO:0005515
Sto3g0995 370 SUPERFAMILY WD40 repeat-like 33 356 IPR036322 GO:0005515
Sto3g0995 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Sto3g0995 370 Gene3D - 147 369 IPR015943 GO:0005515
Sto3g0995 370 Gene3D - 7 138 IPR015943 GO:0005515
Sto3g0995 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0995 Sto-Chr3 6841510 6846967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0995 164 233 Eukaryotic Initiation Factors Gene Family AT2G46280 32.857 8.51e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0995 K13175 K03257 gmx:100820024 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0995 3 6841510 6846967 Sto3g0995 3 6841510 6846967 ECH