Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0987 ATGTACTCCTTAGAGAGTGAAGACGAAGTCCTAACCAAAGCATTCCTCCAAGTTCTATCTTCCAATTCTGTAGAAGAAGGAGGTAGTGCTTTTAAGAGGGAGTTGAATTTGTTGAGAATGGGATCATCATCACATTCACAGCGTTTTGAAGGAAGCAGTAGCCACATCCACATGCTTCATAACATATCTGAACGAAGAAGGCGTCAGAAACTAAATCAGAATTTTCAGGCACTTAGAGCACTACTCCCTCCCGGAACCAAGGTACCAACGGAGAGACTGAAGTGGTTGATGGCGGAGAGTGACAAGTGTAGAAACAGAAAGCAGCAATTAATAGAGAGATTAatgagtagtagtagtagtgtgGGAGTTTCAGTTTCACGTGTAGACCAAACAATGGTGGAGCTGCGACTGAAATCAACAACAAATTCTCAGATCAATGTGTGCATTGGTGTACTGGAATTCTTGAAAGGGGGTCATGCTCATCACAACGTTAACTTCGTTTCCATGGCGGCTACCATTCATGAAGTAATCTTCAGACTAAAGATTATTGAGGAGAGTGAGTGGGACCAGGCTGCCTTCCAAGAAGCACTCAGGACAGATTTGCTCAACATACTATCGTCAAAATGA 627 0.4163 MYSLESEDEVLTKAFLQVLSSNSVEEGGSAFKRELNLLRMGSSSHSQRFEGSSSHIHMLHNISERRRRQKLNQNFQALRALLPPGTKVPTERLKWLMAESDKCRNRKQQLIERLMSSSSSVGVSVSRVDQTMVELRLKSTTNSQINVCIGVLEFLKGGHAHHNVNFVSMAATIHEVIFRLKIIEESEWDQAAFQEALRTDLLNILSSK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0987 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 104 IPR011598 GO:0046983
Sto3g0987 208 Gene3D - 49 120 IPR036638 GO:0046983
Sto3g0987 208 CDD bHLH_AtbHLH_like 60 87 IPR045239 -
Sto3g0987 208 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 30 198 IPR044658 -
Sto3g0987 208 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 30 198 - -
Sto3g0987 208 Pfam Helix-loop-helix DNA-binding domain 59 87 IPR011598 GO:0046983
Sto3g0987 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0987 Sto-Chr3 6759605 6760434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0987 48 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.484 8.62e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g0987 HLH 7.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0987 - - lja:Lj6g3v1239580.1 109.383