Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0966 ATGAGATCGAGGTCGCTTCGGGTGGTTCGCGACGGTTCGCCGGAGGTGGTGGTTATCGCCGACGGCCTGAAGCAGAGCTGCTGGGCCAACATGCCGCAGGAGCTGCTGAGAGAGGTGTTGGCGAGAATTGAGGCATCTGAGAGCTCTTGGCCGCATCGGAAGACTGTGGTGGCTTGTGCCGGTGTGTGCCGCAGTTGGAGGCAAATCACCAAAGAGATCGTCAACGCACCTGGCGTTTCCGCAATGATAACTTTTCCTATCTCTGTTAAGCAGTGTGGCCCAAGGGAGAATATCCTCCAATGCTTTATAAAGCGCCATCGGTCAACCCAAACGTATTATTTGTTTCTCAGTTTAACCAATGCACTAGATGATGATGGGAAGTTCCTTCTGGCAGCACGCAAGTATAGACACCCCACCTACACAGATTATGTCATCTCTCTAGATGCTGATGATATATCAAAGGGAAGCAAGAATTATGTTGGGAAACTGAGGTCAAATTTTCTGGGGACAAAGTTCACAATTTATGATGGTCAGCCACCTCACGAAGGTGTGAAGATTACAAGAAGTTGCTCCACTCGGCTGGGGAATTTGAAACAAGTTTTTCCCAGGGTCCCTACTGGTAACTATCCAGTGGCACACATCTCATACGAATTGAATGTGCTAGGCTCCAGACAATGCCATACTTACCCTGGATATGTTACAAGCAGGGGCCCAAGGAGAATGAATTGTGTTATGGATGCAATTCCTACCTCTGCAATCAAGCCCGGAGGGATAGCCTCTTTACAGACTCAGTTTTCTCTTAGCAATGCAGAAAAACTCTCTGCATTCCCATTTTTCCGGTCAAAATCACATCGAGTTGAAAACTCTATATCTGGGCCCCTGGCCGATGATGGGGTTCTAGTGTTAAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAATGTTGGTGTTTAAACTTCCATGGACGAGTGACAGTTGCTTCGGTTAAAAACTTTCAGCTCGTGGCTTCCCCAGAAAATGGACCTGCTGGCCCAGAACATGAGAGGGTCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTCACAATGGATTACCAGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAAATTGCTTATCAAATAGCTATCTCGAAGTCTCCTTTGCTTCTGGCATTTCTGGGGCAGCATGGTTTAAAGCTCACTAGGTGGGAACTGGGAAGTGATTTGATAGAAGTGTTTGAGATGCTCAATTCCGAGATCACGCATTTAGACAAAGATCAAGATATTTCATTCAGTAATCGAGGACGCTGTCTTCTTCCTGTAGAGGCAGACCACACCATGTTCGTCGTTGCTGAAGCTAGAAGATATCAGATAAATACGTTTACTAGCAACTACGCTTGA 1431 0.4682 MRSRSLRVVRDGSPEVVVIADGLKQSCWANMPQELLREVLARIEASESSWPHRKTVVACAGVCRSWRQITKEIVNAPGVSAMITFPISVKQCGPRENILQCFIKRHRSTQTYYLFLSLTNALDDDGKFLLAARKYRHPTYTDYVISLDADDISKGSKNYVGKLRSNFLGTKFTIYDGQPPHEGVKITRSCSTRLGNLKQVFPRVPTGNYPVAHISYELNVLGSRQCHTYPGYVTSRGPRRMNCVMDAIPTSAIKPGGIASLQTQFSLSNAEKLSAFPFFRSKSHRVENSISGPLADDGVLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGPEHERVILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFDTKIAYQIAISKSPLLLAFLGQHGLKLTRWELGSDLIEVFEMLNSEITHLDKDQDISFSNRGRCLLPVEADHTMFVVAEARRYQINTFTSNYA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0966 476 Gene3D Tubby Protein; Chain A 84 390 IPR025659 -
Sto3g0966 476 Pfam Tub family 89 385 IPR000007 -
Sto3g0966 476 SUPERFAMILY F-box domain 21 71 IPR036047 GO:0005515
Sto3g0966 476 SUPERFAMILY Tubby C-terminal domain-like 78 388 IPR025659 -
Sto3g0966 476 Pfam F-box domain 28 74 IPR001810 GO:0005515
Sto3g0966 476 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 159 183 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 208 235 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Sto3g0966 476 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Sto3g0966 476 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Sto3g0966 476 PANTHER TUBBY-RELATED 4 389 - -
Sto3g0966 476 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0966 Sto-Chr3 6583187 6586908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0966 2 388 TUB Transcription Factor Family AT2G47900 67.857 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto3g0966 Tub 1.3e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0966 K19600 - jre:108995057 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0966 3 6583187 6586908 Sto3g0966 3 6583187 6586908 ECH