Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0956 ATGGAAGGCTATAATAGTGAACGTCTTGGTTTTGGGAAGATGGGCTACGGGTGCAAACATTACAGGAGAAGATGCAAGATTCGGGCTCCCTGCTGCAACGAGATATACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGTTCAGGAATCCCCTTGATCGACACGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCGGTTTGTGATACAGAGCAGCCAGTTTTAGATCTGCTTTTGGCTTATTCTTTCTCTGTGTTTCTTTTAAGGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATATGCAAATTCTTCGATGATGATACAGAGAAAGAGCAATTTCATTGTGAAGATTGTGGGATCTGCAGGGTCTTGCTATTCTCTTAGTCtacttgataatcatttatGTGTGGAGGACTCCATGAGGCATCACTGTCCTATCTGTTATGAGTACCTTTTTGACTCAGTGAAAGACACTACTGTCATGAAATGTGGTCACACAATGCATTGGGAATGTTTCCAAGAGATGATGAAGCGTGACAAGTACTGTTGCCCCATATGCTCTAAATCTGTGGTTGACATGACCAGGATCTGGAAAATGATTGACGAAGAGATTGAAGCAACTGTCATGCCTGACGATTATCGGCACAAGAAGATTTGGATACTATGTAATGACTGCAATGACACTACTGAAGTTTACTTCCACATTATAGGGCAAAAATGTGGCCACTGCAGATCATACAATACACGTGAAATTGCTCCTCCTGTTCTTCCTCAATGA 810 0.4173 MEGYNSERLGFGKMGYGCKHYRRRCKIRAPCCNEIYSCRHCHNEATSMFRNPLDRHELVRQDVKQVVCSVCDTEQPVLDLLLAYSFSVFLLRLLKFAQTVASKWENISATYANSSMMIQRKSNFIVKIVGSAGSCYSLSLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHWECFQEMMKRDKYCCPICSKSVVDMTRIWKMIDEEIEATVMPDDYRHKKIWILCNDCNDTTEVYFHIIGQKCGHCRSYNTREIAPPVLPQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0956 269 SUPERFAMILY RING/U-box 154 202 - -
Sto3g0956 269 SUPERFAMILY CHY zinc finger-like 16 77 IPR037274 GO:0008270
Sto3g0956 269 Pfam CHY zinc finger 18 77 IPR008913 GO:0008270
Sto3g0956 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 227 IPR013083 -
Sto3g0956 269 Pfam Ring finger domain 154 197 IPR001841 -
Sto3g0956 269 ProSiteProfiles Zinc finger RING-type profile. 155 198 IPR001841 -
Sto3g0956 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 269 - -
Sto3g0956 269 Gene3D - 228 264 - -
Sto3g0956 269 SMART ring_2 155 197 IPR001841 -
Sto3g0956 269 Pfam Zinc-ribbon 202 260 IPR039512 -
Sto3g0956 269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 269 - -
Sto3g0956 269 ProSiteProfiles Zinc finger CHY-type profile. 11 88 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0956 Sto-Chr3 6540560 6543227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0956 13 268 C2H2 Transcription Factor Family AT3G18290 33.460 2.52e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0956 K10144 - pvy:116110834 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0956 3 6540560 6543227 Sto3g0956 3 6540560 6543227 ECH