Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0953 ATGGCCAGACCCTCGAAGCCTCAGGTGTCTTCCGACGAGGCTCTATCGAATGATTCAAGTTCTTCGGAGGAGGAGCAGGTCAACGAGCAGATCAACGATGAGGAGGACGAAGAGGAGCTGGAAGCGGTGGCCCGCTCCGGCAGCTCCGACGACGAGGAAGCCGCCGATGAAAATCCACCCGATTCTGACGAAGATGAAGCCGCTGGAGATGGCGACGAGGAGGAACTGGATGAAGGTGTCGATCCTGAGATTAGCAAGCGTGAAAAGGCAAGACTGAATGAAATGCAGAAGCTGAAGAAACAAAAGATTCAGGAGATGCTGGATGCGCAAAATGCTGCTATCGATGCTGAtatgAACAACAAGGGAAAGGGCCGGTTGAAGTTTCTGTTGCAGCAAACTGAACTGTTTGCTCACTTTGCAAAAGGCGATCAATCatctcaaaagaagtcaaaGGGAAGaagaattgaagaagaatttaaaaataaagggACTTCCTCAGGTGGAAACCTTGGCTACCTCATTAAGGCACCAAAGGCGCCTCACCTGAGTCGAGAGGTGAGAATCCTTCTGGTGCCTTCTCTCAGCATTCAGTACCTTACATGTGCCACCTTTGAATCATGCAGGAAGCATATTCTCTCCTTTTTGTTGTCAACACTGTGTATCCAAGGGAAGATGAGGGATTACCAACTAGCTGGCTTAAACTGGCTTATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACATTGCAAACTATCTCCTTATTGGGCTATTTGCACGAGTTTAGAGGAATAACAGGCCCTCACATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTGCGGGCAGTGAAGTTCCTTGGTAATCCTGATGAAAGGAGACATATCAGAGAGAATTTATTAGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGCTTTGAAATGGCAATCAAGGAAAAGTCTGCTTTACGGCGTTTTAGCTGGCGTTACATAATTATTGATGAAGCCCATCGGATCAAGAATGAAAATTCTCTACTTTCCAAAACAATGAGGCTTTACAATACAAACTATCGCCTCCTTATCACTGGAACACCACTTCAGAACAATCTTCATGAACTGTGGGCTCTACTGAACTTCCTTCTTCCGGAAATTTTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAATTGCACAAGGTCCTACGCCCTTTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCCAAAAAGGAAACTATTCTTAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGGGCATTACTGCAGAAGGATCTTGAAGTTGTCAATGCCGGTGGAGAACGGAAGCGTCTCCTGAATATAGCAATGCAACTGCGTAAATGCTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCACCCTATACAACAGGGGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTACTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCCCAGATGACTAGGTTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATACTGTCGCATTGATGGTAATACTGGAGGAGAAGATCGTGATGCTTCCATTGAAGTTTTCAACAAACCGGGAAGTGAGAAATTTGTATTCTTGTTATCAACTCGGGCTGGAGGTCTTGGCATTAATCTTGCCACTGCTGATGTTGTCATCCTTTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGACCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGCAGTATACGATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCCCTTGATGCTCTGGTGATTCAGCAAGGTCGATTGGCTGAGCAGAAAACTGTAAATAAAGATGAATTGCTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAAGATATTGACAGAATCATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGCCAAGATGAAGAAATTTACCGAAGATGCTATAAAATTTAAGATGGATGACACTGCTGAGTTGTACGATTTTGATGACGAGAAGGATGAGAGCAAAGttgatttcaaaaaaattgtaaGTGAGAACTGGATTGAGCCACCAAAGAGAGAGCGGAAGCGCAACTACTCCGAGTCTGAATACTTCAAGCAAACATTGCGCCAAGGCGGTCCTACTAAACCAAAAGAGCCACGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTCTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGcAAACACATCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGCTGGAAGAAAAGGAGCACTTGTTGGAGGAGGGATTTTCGTCATGGAGCCGAAGGGATTTTAATACTTTCATTAGAGCCTGTGAAAAGTATGGTCGAAATGATATAATGAGTATTGCTTCTGAGATGGAAGGAAAGTCTGAGGAGGAAGTTGAAAGATATGCAATGGTTTTCAAAGAAAGATACAAGGAACTAAATGACTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCTAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGCTGGATCGATACAAGAATCCATGGCTGGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAATTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTAGCTACGGTAATTGGGATGAGTTGAAAGCGGCATTTCGAACTTCACCCTTATTTCGTTTTGATTGGTTTGTGAAGTCTCGCACAACACAGGAACTTGCTAGAAGATGTGACACCCTCATTAGATTGGTAGAGAAGGAAAACCAAGAATATGATGAGAGAGAAAGACAAGCTCGGAAGGAGAAGAAACTTGCAAAGAGCATGACACCATCAAAACGGGCCTTGGCAAGACAGACCGAGAGCCCATCTTCGGTGAAGAAGCGCAAGCAATTGACTATGGATGACTATGTTAGCACGCTCACAAAAACTGCCGAACAACGAAAAAACTTGAGCCTTTCCCTATTAACCCGAACCGAGTTACTTGAACCCCAAAATCATGACTGGGACCAAAATGTGAAGATAGAAAAGTTATTACTGAAGTCAACCAGACAGGTGAGTGCTTCATTGCAAGATAGTGGGAACTGGACCATTTTCAGTCGTCTCACTGGATTTGACTTAGATACAACCAAACTTTCTCGATGTCACCTCTTTTCTGGAAACGAAGATGACGCTGCTCGTCTAACGTGTACATTTCCAATTCTCCTCGCCTCGCATATGCACCCAGCAATGATTTATATTGTGGACTAA 3618 0.421 MARPSKPQVSSDEALSNDSSSSEEEQVNEQINDEEDEEELEAVARSGSSDDEEAADENPPDSDEDEAAGDGDEEELDEGVDPEISKREKARLNEMQKLKKQKIQEMLDAQNAAIDADMNNKGKGRLKFLLQQTELFAHFAKGDQSSQKKSKGRRIEEEFKNKGTSSGGNLGYLIKAPKAPHLSREVRILLVPSLSIQYLTCATFESCRKHILSFLLSTLCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEVFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEQYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDESKVDFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKEHLLEEGFSSWSRRDFNTFIRACEKYGRNDIMSIASEMEGKSEEEVERYAMVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLSYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSVKKRKQLTMDDYVSTLTKTAEQRKNLSLSLLTRTELLEPQNHDWDQNVKIEKLLLKSTRQVSASLQDSGNWTIFSRLTGFDLDTTKLSRCHLFSGNEDDAARLTCTFPILLASHMHPAMIYIVD 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0953 1205 Coils Coil 1034 1061 - -
Sto3g0953 1205 Gene3D ISWI, HAND domain 778 876 IPR036306 GO:0003677|GO:0006338|GO:0031491
Sto3g0953 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 724 IPR027417 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 779 810 - -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 9 26 - -
Sto3g0953 1205 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 219 1096 - -
Sto3g0953 1205 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 154 - -
Sto3g0953 1205 SUPERFAMILY Homeodomain-like 932 1054 IPR009057 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 144 161 - -
Sto3g0953 1205 Gene3D - 446 739 IPR027417 -
Sto3g0953 1205 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 789 879 IPR036306 GO:0003677|GO:0006338|GO:0031491
Sto3g0953 1205 SMART sant 877 926 IPR001005 -
Sto3g0953 1205 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 141 164 - -
Sto3g0953 1205 Gene3D iswi atpase 932 964 - -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 1 86 - -
Sto3g0953 1205 Coils Coil 85 112 - -
Sto3g0953 1205 Pfam SNF2-related domain 238 505 IPR000330 GO:0005524|GO:0140658
Sto3g0953 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 440 IPR027417 -
Sto3g0953 1205 SUPERFAMILY Homeodomain-like 880 930 IPR009057 -
Sto3g0953 1205 CDD SF2_C_SNF 526 651 - -
Sto3g0953 1205 Coils Coil 17 37 - -
Sto3g0953 1205 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 402 IPR014001 -
Sto3g0953 1205 CDD SANT 880 924 IPR001005 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 1048 1065 - -
Sto3g0953 1205 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 682 IPR001650 -
Sto3g0953 1205 SMART ultradead3 221 413 IPR014001 -
Sto3g0953 1205 CDD DEXHc_SMARCA1_SMARCA5 222 442 IPR044754 GO:0005524
Sto3g0953 1205 Gene3D - 226 441 IPR038718 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 1048 1085 - -
Sto3g0953 1205 SMART helicmild6 556 640 IPR001650 -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 27 41 - -
Sto3g0953 1205 Gene3D - 877 931 - -
Sto3g0953 1205 Pfam SLIDE 934 1044 IPR015195 GO:0003677|GO:0005634|GO:0006338
Sto3g0953 1205 ProSiteProfiles SANT domain profile. 876 928 IPR017884 -
Sto3g0953 1205 PANTHER SNF2/RAD54 HELICASE FAMILY 219 1096 - -
Sto3g0953 1205 PANTHER SNF2/RAD54 HELICASE FAMILY 9 154 - -
Sto3g0953 1205 MobiDBLite consensus disorder prediction 53 79 - -
Sto3g0953 1205 Gene3D - 965 1068 - -
Sto3g0953 1205 Pfam HAND 790 872 IPR015194 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0953 Sto-Chr3 6515151 6525565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0953 246 668 RAD5 or RAD16-like Gene Family AT1G02670 27.075 4.43e-40 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto3g0953 SNF2_N 8.8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0953 K11654 - gmx:100809750 1811.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0953 3 6515151 6525565 Sto3g0953 3 6515151 6525565 ECH