Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0943 ATGGCCTTGTTTAACTGTTATCGCGAAGCCACTCTTTATCTCAGTCGCATTGCAACAACCTCGCTGACCCCGATACTCTGCTCCATTGCGCATAACAATTCATATAGCACAAGCACTTCAGAGCCACTATCTTCTACGGCGAACTACCTCGTCAGCAATTTGGGGTGCTCACAAGAAATCGCTTCCCAAGTGTCCAAGCATGTTCGTTTTGAGAAACCAGACAAGTCGGACTCAGTGCTTACCTTGTTTAGAAGCTACGGATTCTCAAACTCTCAGATCTCCCAAATGATCAATGCCCGACCGAGGCTGCTCGTGGCCAAGGCTCACAAAACCATTCTTCCCAAGTTAGAGTTTCTTCGGTCTAAGGGTGCGTCCATGTCTGAACTTGTCCACATTGTGTCCTTGAATCCCAGTTTCTTACTGCGAAGCTTAGAGAATTGTATTGTCCCTTCTTATGAtttgtttaagaaaatttttcagTCTGATGAACGAACAATGGAACTCATAAAGCGCCAAGTCTCTATAATTTCAGATTCTCGTGTGGCAAATAATGCTGCAATGTTGCTTGATGATGGAGTCCCCGAGTCCAAGGTTGCTCTGTTACTCTTAAGAAAGCCTCTCTCAGTCAACTTACAATCTGAAACCTTCAAAAAGGTTGTGGAGGAAGTGAAGGAATTGGGATTCAACCCTCTCAAGTCAGATTTTGTCATAGCATTGCACATCAAGATTATAATGAGTGAATCCTCGTGGAAAAGGAAGATTGATTTGTTTAAGAGGTGGGGTTGGTCTGAAGATGCAATTGTTTCTGCATTTTCAAAGCATCCTTGGTGTATGGTGGTATCTGAAGGtaaaattgagaaaattatGGAATTTTTTGTTATCAGTAAGGGCTGGGATTCTATGGAGATTGCAAAATATCCAAAACTACTTTCATACAGTTTGCAGAAGAGAATTTTACCCAGAGTTTCGGTTATTCAGTTTCTCCAGTCAAATGGGTTGATTCGTAAGAATGCTAGACATTATGCTGCATTTCTTATGCCTGAAAAGTTATTCGTGCAGCAATATGTGGATAGCTTTAAGGATAATGCTCCTCAGCTTTTGAAGCTGTATGCAAAAGAACAGAATGTTTCAAAGAAATGA 1140 0.407 MALFNCYREATLYLSRIATTSLTPILCSIAHNNSYSTSTSEPLSSTANYLVSNLGCSQEIASQVSKHVRFEKPDKSDSVLTLFRSYGFSNSQISQMINARPRLLVAKAHKTILPKLEFLRSKGASMSELVHIVSLNPSFLLRSLENCIVPSYDLFKKIFQSDERTMELIKRQVSIISDSRVANNAAMLLDDGVPESKVALLLLRKPLSVNLQSETFKKVVEEVKELGFNPLKSDFVIALHIKIIMSESSWKRKIDLFKRWGWSEDAIVSAFSKHPWCMVVSEGKIEKIMEFFVISKGWDSMEIAKYPKLLSYSLQKRILPRVSVIQFLQSNGLIRKNARHYAAFLMPEKLFVQQYVDSFKDNAPQLLKLYAKEQNVSKK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0943 379 PANTHER CGI-12 PROTEIN-RELATED 35 373 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 35 373 - -
Sto3g0943 379 Pfam mTERF 243 334 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 Pfam mTERF 80 292 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 Gene3D Transcription termination factor 3, mitochondrial 161 362 IPR038538 -
Sto3g0943 379 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Sto3g0943 379 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0943 Sto-Chr3 6460828 6461967 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto3g0943 mTERF 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0943 K15032 - vvi:100252802 292.737