Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0939 TTGTCCCTTCTCCAAAGAAACACATCTCCTTATACTAATGgtgagagaagaggaagaagaaagcaaGGAGAAGCAGGAAGGTTCCTAGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCTGAAATAAGGGACCCCACAACTAAAGAAAGGCATTGGCTTGGAACTTTTGATACTGCTCAAGAAGCAGCTCTTGCTTATGATAGAGCTGCTTTGTCCATGAAAGGAAGCCAAGCTAGAACCAACTTCATTTACTCTGACAATACCTCTTTTGAGTCTCTTCTTTGCCCTTTTGATCTTCAACTCCAATCACACTTCCACTTTAAcactgctactactactactcagAAAAGAAGCAGACAAGAACCAACCAATCAGAATAGTCCATGTCAGCTTATTGATCAGGCTGCATGTGACAATTCTTCAGATAGTTTGTTCTTCTTCTCAAATGGTGATTCTAATAACTCTGGATACTTGGAATGCATTGTTCCTGATAGCTGTTTCAGACCTTCTTGTAAGAAAAGTACTACCAATAGTACTAATTCATCTGGCTTTATTAATAATGCCAgtgctgcttcttcttcttctacttctaGGGACCAAAAGGCATCTCAAGAAGCTATGATGAATATACCAACATTGATGGTGGCCTCTGGCTTTGAAGATTTCTCTTATTATCCAAATGAACTTGTTCAAGAACAATCATGGGATTGGAATAATTACAGTGAACTTTCAGCTATATTTAACAATCCATTAAGGGTTGAAGATGAACATAATACAGGCAGTTCAAGCTATGGTATAATGCCTCAGGCTTCTGTTTCATCAACTACTTGTTCTCCATCACTACTTCCTCCAACTTTTGGGGATGTTGATTTTGGATACTCACTCTTTTGA 894 0.3557 LSLLQRNTSPYTNGERRGRRKQGEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDNTSFESLLCPFDLQLQSHFHFNTATTTTQKRSRQEPTNQNSPCQLIDQAACDNSSDSLFFFSNGDSNNSGYLECIVPDSCFRPSCKKSTTNSTNSSGFINNASAASSSSTSRDQKASQEAMMNIPTLMVASGFEDFSYYPNELVQEQSWDWNNYSELSAIFNNPLRVEDEHNTGSSSYGIMPQASVSSTTCSPSLLPPTFGDVDFGYSLF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0939 297 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 297 - -
Sto3g0939 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 2 297 - -
Sto3g0939 297 Pfam AP2 domain 30 76 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 MobiDBLite consensus disorder prediction 13 27 - -
Sto3g0939 297 CDD AP2 27 83 IPR001471 GO:0003700|GO:0006355
Sto3g0939 297 MobiDBLite consensus disorder prediction 1 27 - -
Sto3g0939 297 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Sto3g0939 297 MobiDBLite consensus disorder prediction 176 205 - -
Sto3g0939 297 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0939 Sto-Chr3 6433765 6434658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0939 1 194 AP2-EREBP Transcription Factor Family AT5G18560 42.570 3.44e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g0939 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0939 - - gmx:100793333 280.796