Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0937 ATGGAGCGGTACGGGCGGGCTAGTGACGGGTCGCAGTCTGTTTCGTCGCCGGAATGGACCGGAGCCGGCGGAGGCGAAACCGGCCTTGAAGAGTCTATGTGGCAATTGGGATTGGGTGGTGGGGAATCGTATCCGCAACGACCCGATGAGGCTGATTGTATCTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCTCGTGACCGTGGCGCGGTTATTGGAGCTGCAAGGACTGGAGGGGAGTATCCAGAGCGAGCAGGCCAGCCTGTATGCCAGTACTATATGAGGACAGGATCCTGCAAATTTGGTGCTTCATGTAAGTACCACCACCCTAGGCAGGGAGGAGGCACTGTTGCCCCCGTGTCACTTAATTATTATGGATATCCACTGCGACCGGGTGAGAAGGAGTGTTCCTATTATGTCAAAACAGGTCAATGCAAGTTTGGCTCAACTTGTAAATTCCATCACCCTCAGCCTGCTGGTGTTCAAGTTCCTGCACCTTCACCTGTGCCCCCAGTTTCACCACTACCTGTACGCGTTCCTTCACCATTATATCCAACCATGCAGCCTCCTTCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGGCCGCCTCTACTACCAAGTTCATTAGTCCAAAGTCCTTATGGGCCTGTTGTAGTGTCCCCTGTACCCTTTTCAGGTTGGAATCCTTATCAGGCTCCTGCAAATCCTGTAGTTCCTTCTCGTACTCCGTCTAATGTTGGTTCAACACAGCTTTATGGCATAACCCAGCTACCTTCATCAGCACCTGCCTACACTGTACCTTATCAACCTACAGGTTCCTCGATTGGTCCTCCAGGCACTAGTCAGAAGGAGCACTCATTTCCAGAGAGGCCTGGTCAACCAGAATGTCAGCATTACATGAAGACAGGGGAGTGTAGATTTGGTCCTTCTTGTAGATATCATCATCCACCTGAATTAATTGCACCAAATATGAATGTGGTCCTAAGCCCTGTTGGTCTTCCTTTGCGCCCGATTGTGCAGGTGCTGTACTTCTGTTTAATCTTGTACTATAGTGTTAGAGTCTGCTCTCATGTGGGGGCACCACCTTGTACTCATTATGCACAGCGTGGAGTATGTAAGTTTGGTCCTGCTTGCAAATTTGATCATCCTATGGGATCACTTAGTTATAGTCCATCTGCTTCCTCCCTTGCTGACATGCCAGTCGCGCCTTATCCTGTGGGTTCATCAATTGGTACTCTTGCTCCATCATCCTCGTCATCAGAGTTGCGACCTGAACTTACCTCCGGATCCACCAAGGAGTCTGTATCCTCCCGAATGTCTTCATCAATGAGCACTTCCGCTGGATCAGTCGGCTTGACTTTATCAACTGGCGGAACCGTTTCTCAATCAAGCGTCCAGGTCCAGCCGTCCACCCAGAGTTCTACTCCTCTAGTGACTACCACTAGCACTGCAAGCAGCACCGGCTCTCACACCTCGAGCTAA 1515 0.5043 MERYGRASDGSQSVSSPEWTGAGGGETGLEESMWQLGLGGGESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARTGGEYPERAGQPVCQYYMRTGSCKFGASCKYHHPRQGGGTVAPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAGVQVPAPSPVPPVSPLPVRVPSPLYPTMQPPSGPSSQQYGVMVARPPLLPSSLVQSPYGPVVVSPVPFSGWNPYQAPANPVVPSRTPSNVGSTQLYGITQLPSSAPAYTVPYQPTGSSIGPPGTSQKEHSFPERPGQPECQHYMKTGECRFGPSCRYHHPPELIAPNMNVVLSPVGLPLRPIVQVLYFCLILYYSVRVCSHVGAPPCTHYAQRGVCKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSTKESVSSRMSSSMSTSAGSVGLTLSTGGTVSQSSVQVQPSTQSSTPLVTTTSTASSTGSHTSS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0937 504 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Sto3g0937 504 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Sto3g0937 504 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Sto3g0937 504 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Sto3g0937 504 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Sto3g0937 504 Gene3D - 290 396 - -
Sto3g0937 504 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Sto3g0937 504 MobiDBLite consensus disorder prediction 281 302 - -
Sto3g0937 504 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Sto3g0937 504 PANTHER PROTEIN PHOSPHATASE RELATED 1 494 - -
Sto3g0937 504 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Sto3g0937 504 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Sto3g0937 504 MobiDBLite consensus disorder prediction 1 28 - -
Sto3g0937 504 ProSiteProfiles Zinc finger C3H1-type profile. 369 396 IPR000571 GO:0046872
Sto3g0937 504 Gene3D - 46 121 - -
Sto3g0937 504 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Sto3g0937 504 MobiDBLite consensus disorder prediction 424 504 - -
Sto3g0937 504 SUPERFAMILY CCCH zinc finger 371 398 IPR036855 GO:0046872
Sto3g0937 504 Gene3D - 122 171 - -
Sto3g0937 504 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Sto3g0937 504 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Sto3g0937 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Sto3g0937 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 372 395 IPR000571 GO:0046872
Sto3g0937 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Sto3g0937 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Sto3g0937 504 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Sto3g0937 504 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 494 - -
Sto3g0937 504 SUPERFAMILY CCCH zinc finger 305 329 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0937 Sto-Chr3 6426165 6431530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0937 1 464 C2H2 Transcription Factor Family AT5G18550 56.695 3.47e-156 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto3g0937 zf-CCCH 4.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0937 - - gmx:100789405 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0937 3 6426165 6431530 Sto3g0937 3 6426165 6431530 ECH