Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0935 ATGTTTAGTCCGAGCATGGAATCTGCGAGGGACACGGGAGGTGTTGCGGGGACGGTGCTAATCCCCATGCGGTTTGTGTGGCCATATGGAGGAAGAAGTGTGTATCTCAGTGGTTCTTTTACCCGATGGTCTGAgcttctaccaatgtcaccagTCGAGGGTTGTCCGACTGTATTTCAAGTTATTTATAGCTTGACCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACACGATGATCGTCAACCTTATGTACCTGGAGAATATGGGATAGTTAACACAGTCTTGTTAGCTACTGATCCTAATTTCATGCCTGTCGTAACTCCAGACATAACTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTTCGACGTGTGCAGGTCCGGTTGACAGATGGTTCGTTGACAGAGATATTGCCCAGAATATCTGATGCTGATGTACAGATCTCCCGTCAGCGTATTGCTGCATTCTTGTCGATGCACACGGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTGCCAGTGAAACAGGCGTTTCATATTTTGCATGAGCAGGGAATCCATATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGTGTTCTTAGTGCTCtggattttattttaattttaagagagCTTGGGAATCATGGATCCAATCTGACAGAAGAGGAGCTTGAAACACACACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAATAGACAAACTAATGGAACGGCATTTCCGAGACGTTTTGTTAATGCTGGACCGTATGATAATTTGAAAGATATTGCCTTGAAGATCCTGCAAAATGAAGTCTCAACAGTTCCTATTATCCATTCATCTTCAGAAGATGGTTCATTTCCACAGCTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGACATTGTACTAATACACTGCCTATACTCCAACTACCAATTTCTGCAATTCCTGTGGGGACCTGGGTGCCCAAAATTGGGGAGTCAAATCGACGGCCTTTGGCAATGTTAAGACCAAGTGCTTCGCTTGCTTCAGCCTTAAATTTATTAGTCCAAGCGCAAGTAAGTTCCATACCAATAGTCGATGATAGTGATTCATTATTGGATATATATTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGagcatatacacatattaatcTTGATGAAATGACTGTTCATCAGGCCTTGCAATTGGGCCAGGATTCATACCAGCCTTACGAACTGAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCTCTGCATAAAGTGATGGAACGGCTAGCTAATCCAGGTATCAGGCGGCTAGTTATCGTGGAAGCTGGTAGCAAGCGTGTAGAAGGCATTGTTTCACTGACTGACATATTCAAGTTCTTCCTTGGTTAA 1470 0.415 MFSPSMESARDTGGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDDRQPYVPGEYGIVNTVLLATDPNFMPVVTPDITSGSNMDVDNEAFRRVQVRLTDGSLTEILPRISDADVQISRQRIAAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIHMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQTNGTAFPRRFVNAGPYDNLKDIALKILQNEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCTNTLPILQLPISAIPVGTWVPKIGESNRRPLAMLRPSASLASALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYQPYELRSQRCQMCLRSDSLHKVMERLANPGIRRLVIVEAGSKRVEGIVSLTDIFKFFLG 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0935 489 CDD E_set_AMPKbeta_like_N 22 100 - -
Sto3g0935 489 ProSiteProfiles CBS domain profile. 353 410 IPR000644 -
Sto3g0935 489 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Sto3g0935 489 Gene3D Immunoglobulins 17 101 IPR013783 -
Sto3g0935 489 Gene3D - 340 489 IPR046342 -
Sto3g0935 489 Gene3D - 148 330 IPR046342 -
Sto3g0935 489 Pfam CBS domain 442 488 IPR000644 -
Sto3g0935 489 Pfam CBS domain 355 401 IPR000644 -
Sto3g0935 489 SUPERFAMILY E set domains 21 102 IPR014756 -
Sto3g0935 489 SMART cbs_1 439 488 IPR000644 -
Sto3g0935 489 SMART cbs_1 357 405 IPR000644 -
Sto3g0935 489 SMART cbs_1 177 226 IPR000644 -
Sto3g0935 489 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 489 - -
Sto3g0935 489 SUPERFAMILY CBS-domain pair 158 327 IPR046342 -
Sto3g0935 489 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 489 - -
Sto3g0935 489 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Sto3g0935 489 ProSiteProfiles CBS domain profile. 435 489 IPR000644 -
Sto3g0935 489 SUPERFAMILY CBS-domain pair 353 488 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0935 Sto-Chr3 6407483 6414511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0935 11 111 Protein tyrosine phosphatase (PTP) family AT3G01510 30.769 1.89e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0935 - - gmx:100781819 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0935 3 6407483 6414511 Sto3g0935 3 6407483 6414511 ECH