Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0929 ATGGAGGGATCGGAGAAGGCGGGAGGGAGttggtcatcatcatcatcatgctgGGCATGGacaaataacaacaacaatggTAGTAGCAGCAGCGAGGTGGATCAGATGTTGTTGCCGATAGCGAATGTGGGTCGGATAATGAAGCAAATACTTCCAGAGAATGCCAAGGTATCCAAGGAAGCCAAGGAGACGATGCAGGAATGCGTGTCGGAGTTCATAAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCGCAAAGAGAGGAGGAAGACACTCAACGCCGACGACATCTGCTCCGCCCTCACCAAACTAGGCTTCGACGATTACGCTCTCCCACTCCACACCTACCTCCATAGGGATAGGCTTCATTTCACATTCGATCCTTAA 387 0.478 MEGSEKAGGSWSSSSSCWAWTNNNNNGSSSSEVDQMLLPIANVGRIMKQILPENAKVSKEAKETMQECVSEFISFVTGEASDKCRKERRKTLNADDICSALTKLGFDDYALPLHTYLHRDRLHFTFDP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0929 128 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 22 121 - -
Sto3g0929 128 SUPERFAMILY Histone-fold 34 120 IPR009072 GO:0046982
Sto3g0929 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto3g0929 128 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto3g0929 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 101 IPR003958 -
Sto3g0929 128 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Sto3g0929 128 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Sto3g0929 128 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Sto3g0929 128 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Sto3g0929 128 Gene3D Histone, subunit A 24 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0929 Sto-Chr3 6354914 6356413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0929 37 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.395 2.07e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto3g0929 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0929 K08065 - tcc:18603481 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0929 3 6354914 6356413 Sto3g0929 3 6354914 6356413 ECH