Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0887 ATGGACCCCAAGCAAGGTCGCAATCTCAATCTCTATGAAGGCAAAGCCTATTCCCTCACCCGCAACATCTTGCTCACCGCCATTCTTGTTTTGCTCTTCCTCATCATTCTAATGATCTGCCTCCACTTCTACTCCCGCTGGTATCTCCGCCGTGCTCGCCTCCGCCTCCGCCGCCGTGCTCGTTTCGTCTTCTACGTCGACTCCGACGACTCCGATCTCCCCTCCCGTGGCCTCGACGCCTCTATCATTCACTCTCTCCCCGTCTTCCTCTACTCCTCCAACACCCACCCCCACTCGGAATGCGCCGTGTGCTTGTCGGAGTTCGAGGATAACGAATCGGGCCGGGTTTTGCCCAAATGCAAACACGCCTTCCACGTGGAGTGTATCGATATGTGGTTCCACTCTCATTCCACTTGCCCGCTTTGCAGATCTCTGGTTGAACCCGTGGGCCAGCCCGGGTCGGAAGTGGTGATAGATGTATGTAAACCGGGTCCGAGTTCAGATGGCGGGGAAGATCAGGAAGAGAATCGAACCGGACCGACGCTTTATAATACGTCGTCGTCTTCGATTGGGGTGAGGCGGATGGCGTCGTTGGTGGGTGTGAACGTTGAGGAGCCAAAGAGCAGGAGCTTTGGGAGAGAGATGAACGGGTCGAGTTGTGGGTCCCCGTCGAATCAGTTGTCGTTTAGATCACCCAGAAGTCAATATGCAAGTCATGTGATACAGACTTCCCATCCACGACAAGTACCCCTCCGGTGCGAAGATATCGGCGATGTGAGAATCCATTATGACCACCTTCGAGTGGGCCCTCCATGGGCGTCCCAGGAAGGACGGCTTCTTGGCTGGGTCCGCGGCGTACTGCGCCTCTCCGATGAACTTGCAGCTCTGGAAGACCAGGGCGCTAGGGCTGTTTGCGACAGAGCGGCCGCCGGCTGTGACGATGCAGTTCTGGTTGTCGAGTGGCTTCCTGACGACGAGAGTGCAGTTCTGGAAGACGGCGTCGGCGTCACCGAAGATGAAGTCGATGGTGCCGGAGATGAGGCAGTTACGGTAGAACTGCCTGTGGGACTGGGAGTACAAGGTTTGGACACCATCTTTGTAGTTGAGGGCACCGGTGAATCTGGTGAGGGTGGGGCCATCTCCAATAATTGTGACAAAAGACATGGATTTATCGATGATCACTTTCTCATTGTATATACCAGCCTTCACGTAGATGACGAAGGGCTTCGCGTTCCTCTTAGGAACCAACTTAAGAGCCTCCGTCAGTGTTTTGAACTGCCCCGATCCATCTTGAGCCACAATTACATTAGGAGTGATTCCCGCCGGAGCAGCAGAACCGGAAGCGGAAGCGGGAGCCGAAGGGGTAACGGGAGCGGTACCACCAGAACGACCAGCCATGGCGAATTCGAGCAGGCGACGGTGGTGGCTGTGGCTCACCCACGACGGTATTCCGTCGGCGTGCTTAGCACCGGCGTCGCTGTCATTAGTAGTTGTGGTGGATGCGACGGCGGTGGAGGAGCTGATCCTGAAGCCGAAGGTTTGGGCGAGATCGGAGATGCCGGTGACGATGTCCAAAGCGTTCATACTGAGCTCCATGGAGGTGTTGAGGACTTTAGCCATGGTCTCGGCGGCGTGGGTGTCGGTGTCCTCGAAGCCGTCCAAGCAGGTGCGTTGGTGGGAGATGGTGGCGGCGAGCCAGACCTTGAGGTCGTAGGCGTAGTCACCGAGCTTGGAGAAGGAGAAGGTGTCGAGGCTTTTCATGGACTTCCTGATGTCGTCGATGGCGTAGTCCAACACCTCATGGCAGATGTGCATGGCCTGCTTCGTCATGTTGTCCTTCGCCAGCTCATCGTAGAGGGTGGAGTTGTCGATGAATTTCCGGAACTCCTTGCCCGCGGCGTGGAATGCTGCTTTGATCAGATCTTTCACTTCGCCGCTGTGGTTCGATGTCTTGGACAGGGATCTCACGCAGGTTTCTTTGTATTCCGCGGAATTGCAGAGCATTTCCACGTTCCTCTGGGAGGTTGA 2028 0.5616 MDPKQGRNLNLYEGKAYSLTRNILLTAILVLLFLIILMICLHFYSRWYLRRARLRLRRRARFVFYVDSDDSDLPSRGLDASIIHSLPVFLYSSNTHPHSECAVCLSEFEDNESGRVLPKCKHAFHVECIDMWFHSHSTCPLCRSLVEPVGQPGSEVVIDVCKPGPSSDGGEDQEENRTGPTLYNTSSSSIGVRRMASLVGVNVEEPKSRSFGREMNGSSCGSPSNQLSFRSPRSQYASHVIQTSHPRQVPLRCEDIGDVRIHYDHLRVGPPWASQEGRLLGWVRGVLRLSDELAALEDQGARAVCDRAAAGCDDAVLVVEWLPDDESAVLEDGVGVTEDEVDGAGDEAVTVELPVGLGVQGLDTIFVVEGTGESGEGGAISNNCDKRHGFIDDHFLIVYTSLHVDDEGLRVPLRNQLKSLRQCFELPRSILSHNYIRSDSRRSSRTGSGSGSRRGNGSGTTRTTSHGEFEQATVVAVAHPRRYSVGVLSTGVAVISSCGGCDGGGGADPEAEGLGEIGDAGDDVQSVHTELHGGVEDFSHGLGGVGVGVLEAVQAGALVGDGGGEPDLEVVGVVTELGEGEGVEAFHGLPDVVDGVVQHLMADVHGLLRHVVLRQLIVEGGVVDEFPELLARGVECCFDQIFHFAAVVRCLGQGSHAGFFVFRGIAEHFHVPLGG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0887 675 MobiDBLite consensus disorder prediction 436 468 - -
Sto3g0887 675 MobiDBLite consensus disorder prediction 162 184 - -
Sto3g0887 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Sto3g0887 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 203 - -
Sto3g0887 675 MobiDBLite consensus disorder prediction 212 226 - -
Sto3g0887 675 PANTHER RING-H2 FINGER PROTEIN ATL64 15 203 - -
Sto3g0887 675 SMART ring_2 101 142 IPR001841 -
Sto3g0887 675 CDD RING-H2_EL5_like 100 143 - -
Sto3g0887 675 SUPERFAMILY RING/U-box 82 148 - -
Sto3g0887 675 MobiDBLite consensus disorder prediction 207 226 - -
Sto3g0887 675 Pfam Ring finger domain 100 143 IPR001841 -
Sto3g0887 675 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0887 Sto-Chr3 6078073 6082521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0887 3 248 Rapid Response to Elicitors AT3G16720 43.704 1.20e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0887 - - lja:Lj6g3v1468220.1 191.815