Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0880 ATGAATTCCAATTATGCCAAATCCAACCAACAGAAAGGTTCTTCCGTTTCCTTGAATAACTTCAATTTCGACTTTGATCTTGGGATCGGATCCAATCGATCCAAATCTCTCAACGATCAGAAAAACCATACCTCCTCCAATTCATATTttacctcttcttcttcttcgtcctcTTCATTCGCATCTACCCAACCAAGACCCGCTTGGCAGCCCAACAAGCCAACATGGACTCACCAGCCGGCGCCCTCTCTGGCGGCTCAGCCCGGCTTGCCCACTGGACCCCCTTCAATGGTTGGGGATATCTTTGGCAAGAGTTGGGGATCCACACAGCCTTCGGCTTCCAGTTCAACTATTGGAATTACAAATAAGAACCCTAATCTCTTTGGGGATTTGGTGGGCTCTGCTCTGGGGCAGAGTTCTAAGAGTAGCACCAATGTTCCTCTCAAAAATGCTACGCCTATTTCCAAGGTATCAGCATCAGGTACCACATCTAACAAGACTTCCTTTTCCATGGGAGGTATGGCTGATTCTTTGCCTAAAACTAGTAGTACCGTGCAAAGTCATGCAAGTTGGGGATCCTCCGGGGgctatagtaataataataataataataatataaactcCAATAAAAGTACCAATCTTGGGGGTCCTTCATTGCGTAGCATGAATAGTAGTGGTGGTGCAGCTGGAAGTGGAATGAGTTCTAATACAGATCCATTTGGTTCCTTGGCTGGTTTTGGATCCAAACAATCTGGTAGTCTTAATTCAGCTGGCAAACCCAAAGAGAATCATACAGGGGATGATGATTTTGGCGATTTTCAGAATGCTTCCAAGCCAAACTCTACCCCATTCCCGTCAAGTAGTTCAACAGCAAATGGTATCAATCTTAATGGATCTGTAGCTTCGAGTCAGAAGCCCACGCAGACTTCACTTGGCGGTGATCCATTGGACATGCTTTTCTCATCTTCCTCAGCTTCAGCTGGAAGTGCTGCAGTGGCCTCCGAAGGATTTGGAGGACAGCCCTCTTCTGAAGTTGATGATTGGGGCATAGATTCTGAGTTTGGTGGAGGAGGCCATGATGTGGGTGGTACAACCACTGAGCTTGAAGGCCTTCCGCCTCCTCCTGCTGGTGTATCTGGTTCCTCAGCAAAGAGTAAGGGTATGGAAAATTACAAGCAGGGGCAGTTTGCTGATGCTATAAAGTGGCTATCCTGGGCTGTCATCCTTCTTGAGAAAGCAGGTGATAATGCAGGCACAGTGGAGGTTTTGTCGTGCAGAGCTTCATGTTTCAAAGAAGTTGGGGAATATAAGAAAGCGGTAGCAGATTGTTCAAAGGTGCTTGAAGGCAATGAAACAAATGCATCTATCCTCGTACAGCGTGCTCTCTTGTATGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGATCTGAGAACTGTTCTGAAGATTGATCCTACTAATAGGGTTGCAAGAAGTACCATTCATCGATTGAATAAAATGGCTGATTAG 1509 0.444 MNSNYAKSNQQKGSSVSLNNFNFDFDLGIGSNRSKSLNDQKNHTSSNSYFTSSSSSSSSFASTQPRPAWQPNKPTWTHQPAPSLAAQPGLPTGPPSMVGDIFGKSWGSTQPSASSSTIGITNKNPNLFGDLVGSALGQSSKSSTNVPLKNATPISKVSASGTTSNKTSFSMGGMADSLPKTSSTVQSHASWGSSGGYSNNNNNNNINSNKSTNLGGPSLRSMNSSGGAAGSGMSSNTDPFGSLAGFGSKQSGSLNSAGKPKENHTGDDDFGDFQNASKPNSTPFPSSSSTANGINLNGSVASSQKPTQTSLGGDPLDMLFSSSSASAGSAAVASEGFGGQPSSEVDDWGIDSEFGGGGHDVGGTTTELEGLPPPPAGVSGSSAKSKGMENYKQGQFADAIKWLSWAVILLEKAGDNAGTVEVLSCRASCFKEVGEYKKAVADCSKVLEGNETNASILVQRALLYESMEKYKLGAEDLRTVLKIDPTNRVARSTIHRLNKMAD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0880 502 Gene3D Tetratricopeptide repeat domain 379 502 IPR011990 GO:0005515
Sto3g0880 502 MobiDBLite consensus disorder prediction 331 385 - -
Sto3g0880 502 ProSiteProfiles TPR repeat profile. 454 487 IPR019734 GO:0005515
Sto3g0880 502 MobiDBLite consensus disorder prediction 103 121 - -
Sto3g0880 502 PANTHER OS03G0340700 PROTEIN 1 502 - -
Sto3g0880 502 MobiDBLite consensus disorder prediction 154 260 - -
Sto3g0880 502 MobiDBLite consensus disorder prediction 274 317 - -
Sto3g0880 502 MobiDBLite consensus disorder prediction 154 317 - -
Sto3g0880 502 MobiDBLite consensus disorder prediction 29 82 - -
Sto3g0880 502 SUPERFAMILY TPR-like 384 495 IPR011990 GO:0005515
Sto3g0880 502 MobiDBLite consensus disorder prediction 29 121 - -
Sto3g0880 502 SMART tpr_5 454 487 IPR019734 GO:0005515
Sto3g0880 502 SMART tpr_5 420 453 IPR019734 GO:0005515
Sto3g0880 502 SMART tpr_5 380 413 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0880 Sto-Chr3 6044630 6046707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0880 379 499 Calmodulin-binding Proteins AT3G25230 28.244 3.19e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0880 - - pvu:PHAVU_003G107800g 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0880 3 6044630 6046707 Sto3g0880 3 6044630 6046707 ECH