Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0879 ATGTGTGGGGGTGCTATCATCTCTGATTTCATTGGCGTTAGGCGTGGCCGGAAATTGACCGCCGCTGATCTCTGGTCCGAGCTTGACCCTCTCTCAGACCTCCTTGGTTTCGACaccaactcttcttcttcccgtCCTACCGCCCAATTCCATCAAAACCTCCCTCAATTCCCAACTAACAAAGGCATAGCAGAATCCCCaaagcaaaacaaaaataaagagcaAGGATTGGATTTAGATAATGTTCGTTTGTATTGTACAGTCGGAGAGGCACGTGAGAAGGAGCAGAAGAAAAGCGTGTGTGGTGGAGGGAGCAGGCGCACTCAGACTCAGACTCAGAGGGCTCGCAAGAACGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAGGGTGTCCGAGTGTGGCTCGGCACCTTCAACACAGCCGAGGAGGCCGCCAGAGCCTACGACGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGACACCACCCACCAGCCTCCGCCTCCTCCCGCGCCCGAACGACCCTCCAAGAAGCGATGCCTTAGCCCTGAGCTAAGTGAGGCCACCGGACCACCGCCTTATTACGACACCGATCTGGAGCTGAAGAAGCAAATCTCAACCCTGGAATCGCTGCTTGGTTTGGAGCATGAGGAGGAACCGAGTGAGCAGCAGGTGAGCTGTGGAtttagcagcagcagcagcagcggTGACTCTGAGTGGGCGGCGCCGGAGTCGTCGATGGACCTGTGGATGTTGGACGACGTGGTTATGCAACACATGGCGGCCAACCGTAACCTGGTGTACTGA 855 0.531 MCGGAIISDFIGVRRGRKLTAADLWSELDPLSDLLGFDTNSSSSRPTAQFHQNLPQFPTNKGIAESPKQNKNKEQGLDLDNVRLYCTVGEAREKEQKKSVCGGGSRRTQTQTQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFPDTTHQPPPPPAPERPSKKRCLSPELSEATGPPPYYDTDLELKKQISTLESLLGLEHEEEPSEQQVSCGFSSSSSSGDSEWAAPESSMDLWMLDDVVMQHMAANRNLVY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0879 284 MobiDBLite consensus disorder prediction 40 66 - -
Sto3g0879 284 PANTHER EREBP TRANSCRIPTION FACTOR 1 201 - -
Sto3g0879 284 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Sto3g0879 284 MobiDBLite consensus disorder prediction 40 74 - -
Sto3g0879 284 MobiDBLite consensus disorder prediction 97 119 - -
Sto3g0879 284 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Sto3g0879 284 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Sto3g0879 284 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Sto3g0879 284 PANTHER DNA-BINDING DOMAIN 1 201 IPR044808 GO:0003700|GO:0009873
Sto3g0879 284 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Sto3g0879 284 MobiDBLite consensus disorder prediction 173 213 - -
Sto3g0879 284 MobiDBLite consensus disorder prediction 231 259 - -
Sto3g0879 284 MobiDBLite consensus disorder prediction 102 118 - -
Sto3g0879 284 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Sto3g0879 284 Gene3D AP2/ERF domain 119 177 IPR036955 GO:0003700|GO:0006355
Sto3g0879 284 MobiDBLite consensus disorder prediction 178 192 - -
Sto3g0879 284 MobiDBLite consensus disorder prediction 239 257 - -
Sto3g0879 284 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0879 Sto-Chr3 6038091 6039483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0879 1 275 AP2-EREBP Transcription Factor Family AT3G16770 40.968 1.07e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g0879 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0879 K09286 - qsu:112020180 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0879 3 6038091 6039483 Sto3g0879 3 6038091 6039483 ECH