Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0876 ATGGTGTCTTTGAAGCTTCAGAAGAGGCTTGCTGCCAGTGTCCTCAAGTGCGGAAGAGGGAAAGTATGGCTCGACCCCAATGAAGTTAACGAGATATCCATGGCCAATTCTAGACAAAACATCAGAAAACTAGTGAAGGATGGTTTTATCATCAGGAAGCCAACAAAGATTCATTCTCGATCCCGTGCCCGAAGGATGAAGGAGGCCAAGAGAAAGGGTCGTCACTCTGGATATGGTAAACGTAAGGGTACCAGGGAGGCACGGCTGCCAACAAAAATACTATGGATGAGGAGAATGCGTGTGCTGAGGCGGCTGCTTCGTAAGTATCGTGAATCCAAAAAAATTGACAAGCATATGTACCATGACATGTACATGAAGGTAAAAGGTAATGTCTTCAAGAACAAGCGCGTTTTGATGGAAAGCATCCACAAGACCAAGGCTGAAAAGGCCAGAGAGAAAACACTGTCTGACCAATTTGAGGCCAAGCGTGCAAAGAGCAAGGCAAGCAGGGAGAGAAAGTTGGCCAGAAAAGAGGAGCGGCTGGCACAGGGACCTGGAGAGAGAGCACCTCCAGCTGCATCACAACCACAAGCTGAGGGGGCTAAGAAAACAAAGAAGTGA 621 0.4783 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKSKASRERKLARKEERLAQGPGERAPPAASQPQAEGAKKTKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0876 206 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto3g0876 206 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto3g0876 206 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Sto3g0876 206 MobiDBLite consensus disorder prediction 57 79 - -
Sto3g0876 206 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Sto3g0876 206 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Sto3g0876 206 MobiDBLite consensus disorder prediction 152 206 - -
Sto3g0876 206 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto3g0876 206 MobiDBLite consensus disorder prediction 152 184 - -
Sto3g0876 206 Gene3D - 57 188 - -
Sto3g0876 206 PANTHER RIBOSOMAL PROTEIN L19 1 205 - -
Sto3g0876 206 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Sto3g0876 206 PANTHER 60S RIBOSOMAL PROTEIN L19 1 205 IPR039547 GO:0003723|GO:0003735|GO:0022625
Sto3g0876 206 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0876 Sto-Chr3 6023385 6025344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0876 1 206 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.615 2.50e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0876 K02885 - thj:104820284 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0876 3 6023385 6025344 Sto3g0876 3 6023385 6025344 ECH