Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0875 ATGGCGGCGGACGGATTGATGCCCGGGGGTGCCTCCCGGTACGTTCAACTACCACCGGAGCCACAGGAGCCACCGTCCACAGCGGTGTCGCCTGCTGCAGCGCTTCGCCAAGGCGGCCCTGAGCCTACTCGGATTTTCGATGAGATACCCAAAGCCACCATCGTTTCCGTCTCTCGTCCCGACGCCGGCGACATCAGTCCCATGCTTCTCTCCTATACCATTGAATTTCAATACAAACAATTCAAGTGGCAGTTAGTGAAGAAAGCTTCTCAAGTAATTTATTTGCATTTTGCATTGAAGAGACGAGCATTTATTGAGGAAATTCATGAAAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAGTCTAGGAATAGGAGAAAACACCACTATGGtgcaagatgatgatgaagcagaTGATGAAACTATTTTACATCAAGATGAAAGTGCTAAAGAAGACAGGCCCAGAGACGTTCCATCTATTGCTGCATTACCAATTATACGTCCTGCCTTAGGAAGACAGCAGTCTATATCAGACAGAGCAATGATTGCTATGCAGGGATATCTCAGTCACTTTTTTGGAAATATTACTATTGTTAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCAAACTTATCTTTCTCACCTGAATATGGCCCTAAGTTGAAGGAGGATTATGTGATGGTGAAGCATCTGCCAAACATTTTAAAGGATGATGATTCTAGAAAATGTTGTATATCTCAGTGTTTCAGTTGTTGCAACGACAACTGGCAAAAGGTTTGGGCCGTACTAAAACCTGGATTCTTGGCATTTATGGCAGATCCTTTTGATACCCAACCTGTGGACATTATTGTTTTTGATGTACTTCCTGCCTCAAATGGGAACAGAGAAGGTTGTCTATCACTAGCTAAGGAAGTGAATGAACCAAACCCATTACGTCATTCGTTCAAGGTGACTTCTGGAAATCAGAGCATAAAGGTAAGAGCAAAAAGTGGTGCTAAAGTTGAAGATTGGGTTGCTGCTATAAATGATGCTGGACTAAAACCTCCAGAAGGCTGGTGTCATTCTCACCGCTATGGTTCTTTTGCTCCTCCAAGAGGCTTGATTGAAGATGGTAGCCAGGCACAATGGTTCATAGATGGTCGAGCAGCATTTGATGCCATTTCTTCTTCAATTGAGAATGCAAAATCAGAGATATTTATTTGTGGATGGTGGCTGTGCCCAGAACTTTATATGCGGCGTCCTTTTCACTCTCATGCTTCATCAAGGCTGGATAATTTGCTGGAAGCAAAGGCTAAGCAAGGGGTCCAGATTTTTATTCTCCTCTACAAAGAGGTGGCCCTTGCTTTGAAAATCAACAGTATTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGTTATCCTGATCACTTTTCTAGCGGCATTTACTTGTGGTCCCACCATGAAAAACTAGTTATTGTTGATCACCAGATTTGCTTTATTGGAGGACTGGATTTGTGCTTTGGTCGTTATGACACACCTGAGCACAAAGTGGGAGATCTCCCTCCTTTGACCTGGCCTGGAAAGGATTATTATAACCCTAGGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAACTGGATCGCGGAAAATATCCTCGCATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCACCTTGTCGTGACATTGCGAGGCACTTTGTTCAGAGATGGAATTATGCAAAGAGGAACAAAGCTCCATATGAGCAGGCAATACCATTACTTATGCCTCAGCATCATATGGTTATTCCACACTACTTGGGAAGAGGCGAAGAATTGGAAATTGAAAGTGAGAGTTCTAACAATCATAGAAGAATCAAAAGGGACGATTCCTTTACCTCATCGCCCCAAGATATTCCTCTACTTTTGCCTCAGGAATCTGGTGGGCTACATACTCCTGAAGGATACCCAAAATCAAATGGGATAACCACCATTTCACATCTTGATCAGCCAAGCAAGATGAACACTGGTCTTCCTATCCCTTCCCGGAAGGCCAAAATTGAACCAGCTGGCTCAGAGACACCAATGAAAGGCTTTGTCAATGAGCTTGATTCAGTGGAGGGTAGTGAGAAAGTTACTCAGGATAGAGTCTCTCATGTCAGCACGAAAAGTATAGATAAAGAATGGTGGGAAACACAAGAGCGGGGTGACCAGGGAGGCTTTACAGATGGATTTGGGCAAGTTGGTCCCTGTGCTTCCTGCCGCTGTCAGGTTATGAGGAGTGTCAGTCAATGGTCTGCTGGGACAAGCCAAACTGAACAGAGCATCCACAATGCTTATTGCTCTCTTATTGAGAAAGCAGAATACTTTATCTACATCGAGAATCAATTTTTTATCTCAGGTCTATCGGGAGATAtgatgatacaaaatcgtgTTTTAGAAGCTTTATATCAACGGATTAAGCGAGCATACAATGATAAAAAGAATTTTAGGGTTATAATTGTCATACCACTCCTTCCTGGCTTCCAGGGGGGCCTTGATGATAGTGGAGCAGCATCTGTAAGAGCCATAATGCACTGCCAGTACCGAACCATTTGCAGAGGACAAAATTCTATATTACATAATCTATATGATCTTCTTGGTCAAAAAGTAAATGATTACATATCTTTCTATGGCCTCAGGGCTTATGGTAGACTCTTTGATGGTGGTCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGACTGTACAACTCTAATTGGATCTGCTAACATCAATGATAGAAGCTTACTTGGCTCCAGAGACTCTGAAACTAATGTAGTCATAGAAGACAGAGAGTTCACCAGTTCATACATGGATGGAAAACTATGGAAAGCAGGAAAGTTCTCGCTGACCCTTCGATTGTCATTATGGTCTGAACACTTGGGTCTTCAAGCAGGAGAGATTGATCGAATAACGGACCCGGTTGTTGAGTCTACTTACAAGGATATTTGGGTGGCAACAGCGAAGACAAATACTGCAATTTACCAGGATGTCTTTTCTTGCGTACCAAATGATCTGATACACTCCAGATTTGCTTTCAGACAAAGCATGACTTTCTGGAAAGAAAAAATTGGCCACACTACCATTGATATGGGAATTGCCCCAAAACTATTAGAATCTTATCATAATGGAGGTATCAAGAATACAGATCCACTGGAGAGATTAGCTTCAGTGAAGGGTCATCTTGTTTGTTTTCCCTTGGAGTTCATgtgtaaagaaaatttaaaacctGCTTTCAATGAAAGCGAGTACTATGCTTCTCAAGTATTTCATTGA 3348 0.4197 MAADGLMPGGASRYVQLPPEPQEPPSTAVSPAAALRQGGPEPTRIFDEIPKATIVSVSRPDAGDISPMLLSYTIEFQYKQFKWQLVKKASQVIYLHFALKRRAFIEEIHEKQEQVKEWLQSLGIGENTTMVQDDDEADDETILHQDESAKEDRPRDVPSIAALPIIRPALGRQQSISDRAMIAMQGYLSHFFGNITIVNSREVCRFLEVSNLSFSPEYGPKLKEDYVMVKHLPNILKDDDSRKCCISQCFSCCNDNWQKVWAVLKPGFLAFMADPFDTQPVDIIVFDVLPASNGNREGCLSLAKEVNEPNPLRHSFKVTSGNQSIKVRAKSGAKVEDWVAAINDAGLKPPEGWCHSHRYGSFAPPRGLIEDGSQAQWFIDGRAAFDAISSSIENAKSEIFICGWWLCPELYMRRPFHSHASSRLDNLLEAKAKQGVQIFILLYKEVALALKINSIYSKKKLLSIHENVRVLRYPDHFSSGIYLWSHHEKLVIVDHQICFIGGLDLCFGRYDTPEHKVGDLPPLTWPGKDYYNPRESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRGEELEIESESSNNHRRIKRDDSFTSSPQDIPLLLPQESGGLHTPEGYPKSNGITTISHLDQPSKMNTGLPIPSRKAKIEPAGSETPMKGFVNELDSVEGSEKVTQDRVSHVSTKSIDKEWWETQERGDQGGFTDGFGQVGPCASCRCQVMRSVSQWSAGTSQTEQSIHNAYCSLIEKAEYFIYIENQFFISGLSGDMMIQNRVLEALYQRIKRAYNDKKNFRVIIVIPLLPGFQGGLDDSGAASVRAIMHCQYRTICRGQNSILHNLYDLLGQKVNDYISFYGLRAYGRLFDGGPVATSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSETNVVIEDREFTSSYMDGKLWKAGKFSLTLRLSLWSEHLGLQAGEIDRITDPVVESTYKDIWVATAKTNTAIYQDVFSCVPNDLIHSRFAFRQSMTFWKEKIGHTTIDMGIAPKLLESYHNGGIKNTDPLERLASVKGHLVCFPLEFMCKENLKPAFNESEYYASQVFH 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0875 1115 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 482 509 IPR001736 GO:0003824
Sto3g0875 1115 ProSiteProfiles PH domain profile. 256 347 IPR001849 -
Sto3g0875 1115 MobiDBLite consensus disorder prediction 618 636 - -
Sto3g0875 1115 PANTHER PHOSPHOLIPASE 32 1112 - -
Sto3g0875 1115 PANTHER PHOSPHOLIPASE D 32 1112 IPR015679 -
Sto3g0875 1115 SUPERFAMILY PH domain-like 254 345 - -
Sto3g0875 1115 CDD PLDc_vPLD1_2_yPLD_like_1 375 520 - -
Sto3g0875 1115 SUPERFAMILY Phospholipase D/nuclease 752 962 - -
Sto3g0875 1115 SMART PH_update 221 349 IPR001849 -
Sto3g0875 1115 Gene3D Endonuclease Chain A 369 604 - -
Sto3g0875 1115 PIRSF PLD_euk 522 627 IPR016555 GO:0004630|GO:0006654|GO:0048017
Sto3g0875 1115 PIRSF PLD_euk 56 528 IPR016555 GO:0004630|GO:0006654|GO:0048017
Sto3g0875 1115 PIRSF PLD_euk 618 1115 IPR016555 GO:0004630|GO:0006654|GO:0048017
Sto3g0875 1115 Gene3D - 246 348 IPR011993 -
Sto3g0875 1115 Pfam Phospholipase D Active site motif 482 509 IPR001736 GO:0003824
Sto3g0875 1115 SMART pld_4 912 939 IPR001736 GO:0003824
Sto3g0875 1115 SMART pld_4 482 509 IPR001736 GO:0003824
Sto3g0875 1115 MobiDBLite consensus disorder prediction 1 41 - -
Sto3g0875 1115 CDD PLDc_vPLD1_2_yPLD_like_2 772 956 - -
Sto3g0875 1115 Pfam PLD-like domain 785 961 IPR025202 -
Sto3g0875 1115 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 912 939 IPR001736 GO:0003824
Sto3g0875 1115 CDD PH_PLD 198 345 - -
Sto3g0875 1115 Gene3D Endonuclease Chain A 708 975 - -
Sto3g0875 1115 MobiDBLite consensus disorder prediction 661 681 - -
Sto3g0875 1115 SUPERFAMILY Phospholipase D/nuclease 336 602 - -
Sto3g0875 1115 MobiDBLite consensus disorder prediction 618 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0875 Sto-Chr3 6011379 6021850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0875 1 992 Phospholipase D Gene Family (Wang group) AT3G16785 70.659 0.0 1364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0875 K01115 - gmx:100780514 1855.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0875 3 6011379 6021850 Sto3g0875 3 6011379 6021850 ECH