Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0854 ATGTCATCGGCTAGTTCCAGTGCAGCAGCTCGGAAATTCAACGGCGACGGCGCCGGTGACCAGTTTCCGGTGGGACTCCGGGTGCTGGTAGTGGACGATGATCCCACGTGCCTTATGATCCTTGAGAGGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAAGCGAGCTGAGGTTGCTTTGTCACTCCTGAGAGAGAACAAAAATGGGTATGACATAGTTCTAAGTGATGTGCATATGCCAGACATGGATGGCTTTAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCCGATGATGGAAAAAATGTTGTCATGAAAGGTGTGACGCACGGTGCCTGTGATTACCTGATAAAACCCGTGCGCATAGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAAAGAAAGAATGAGTGGAAGGATGTGGAGCAATCCTGTAGTGCAGAAGAAGGAGATCGACAGCAAAAGCCATCCGATGAGGCTGATTACTCGTCCTCGGCAAATGAAGGAAATTGGAGAAATGCTAAGAAGAAGAGGGATGAGGATGAAGAAGGAGAGGACAAGGATGATTCATCCACAATAAAGAAGCCACGTGTTGTATGGTCCGTCGAGCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTTGGAATTGACAAGGCTGTTCCTAAAAAGATTCTGGAGTTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCATCTCCAAAAATACCGTTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAGTAACTTGAATAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCTGCATTTAACGGAATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCAGCACAAAGTCTGGCAACACTTCAAGCAGCTGGACTTGGTAGATCAACTGCTAAAGCCGATGTATCTATGCCCCTTGTGGATGAAAGGAACATTTTCAGTTTTGAAAACCCAAGATTAAGATATGGAGAAGGGCAGCAACAACATTTGAGCAGTACTAAACCGATGAACTTTCTTCATGGAATCCCTACCAACATGGAGCCTAAGCAGCTCGCCAGTTTGCAGCAATCCACACAATCCCTTAGTGGCTTGAGCATGCGAATCAATGCTTCTTCTGCACAAAGCAACCCCTTATTGGTGCAGACTGCTCAATCCCAAGCAAGAGGTCAGATGCTAAGTGAAAATACCATAGCCAATTCTCATCTTGCTAGACTTCCGTCATCTGTAGGGCAGCCTTCTGTACCAAATGGAATTTCAAATAATGTTTTGGCAAGAAATGGGGTTGCTGCTATTAACAGAGGAGCTGCTTATAGTCCAATTTCACAAACCTCTTCGATGCCAAGTTTTCCCATGAACCAAACTACAGAATTGTCTGTAAGTAGTTTCCCACTCGGCAGCACACCGGGATTACCTAGTATCACTTCCAAAGGCATGTTTCAAGAGGAAGTTACTTCGGAAATCAAAGGTTCTAGTGGGTTTGTTCAAAATTATGATATTTATAATGAACTATCTCAGCACAAGTCCCATGATTGGGTACAAAACGTGGGCCTCATGTACGATACATCTCAGCTTGCAAACCCTTTACAAGGTAACATTGGTGTCTCGCCATCGGTTATAGTCCATCAAGGCTTTTCTTCCACCCAACAAACAGGACAGATTAGAGATTCTACTCCAATTGGAAAAGCCATGTACTCTCTAGGGAAAGGCATGGAACAAGGAAATCACCAAAATATCAGTCAACACCTCCAGCCACTTGTTGATAATTCTGCAAGGGTTAAGGCTGAAAATTTTCCTGATGCCAACTCTCATTCTAATTTCTTCCCTGAGCAATATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGAGCAGCTGAGAATGAATTTGACTTTGATATTCCTGTGTAG 2001 0.4448 MSSASSSAAARKFNGDGAGDQFPVGLRVLVVDDDPTCLMILERMLRTCLYEVTKCKRAEVALSLLRENKNGYDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDVEQSCSAEEGDRQQKPSDEADYSSSANEGNWRNAKKKRDEDEEGEDKDDSSTIKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFISPQEATFGTMSAFNGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKADVSMPLVDERNIFSFENPRLRYGEGQQQHLSSTKPMNFLHGIPTNMEPKQLASLQQSTQSLSGLSMRINASSAQSNPLLVQTAQSQARGQMLSENTIANSHLARLPSSVGQPSVPNGISNNVLARNGVAAINRGAAYSPISQTSSMPSFPMNQTTELSVSSFPLGSTPGLPSITSKGMFQEEVTSEIKGSSGFVQNYDIYNELSQHKSHDWVQNVGLMYDTSQLANPLQGNIGVSPSVIVHQGFSSTQQTGQIRDSTPIGKAMYSLGKGMEQGNHQNISQHLQPLVDNSARVKAENFPDANSHSNFFPEQYGQEDLMSALLKQQEGIGAAENEFDFDIPV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0854 666 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Sto3g0854 666 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 641 IPR045279 GO:0009736
Sto3g0854 666 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Sto3g0854 666 SMART REC_2 26 138 IPR001789 GO:0000160
Sto3g0854 666 CDD REC_typeB_ARR-like 28 142 - -
Sto3g0854 666 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Sto3g0854 666 MobiDBLite consensus disorder prediction 182 203 - -
Sto3g0854 666 MobiDBLite consensus disorder prediction 155 203 - -
Sto3g0854 666 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160
Sto3g0854 666 SUPERFAMILY CheY-like 25 149 IPR011006 -
Sto3g0854 666 Gene3D - 26 204 - -
Sto3g0854 666 MobiDBLite consensus disorder prediction 155 169 - -
Sto3g0854 666 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Sto3g0854 666 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 641 - -
Sto3g0854 666 Gene3D - 205 265 - -
Sto3g0854 666 PIRSF RR_ARR_type-B 4 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Sto3g0854 666 Pfam Response regulator receiver domain 28 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0854 Sto-Chr3 5915345 5918466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0854 60 663 Response Regulator Gene Family AT3G16857 49.238 6.78e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto3g0854 Response_reg 9.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0854 - K14491 gmx:100814930 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0854 3 5915345 5918466 Sto3g0854 3 5915345 5918466 ECH