Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0850 ATGGTGGATCCGAGTGGGAAAGGATCAGAAGCGGAGGAGGCTAATGCGAGAAATCCGAACGGTGATTCGTCGGAAGAGAGCCCAACAATGAGCGAGCAGAAGAAGACGTGTGCTGATTGCGGCACCAGCAAGACCCCTCTCTGGAGGGGTGGTCCAGCTGGGCCCAAGTCACTGTGCAACGCGTGTGGGATCAGAAgcaggaagaagaaaagagcgATTCTGGGTCTGAACAAGGGAAGCAGTGAAGATAATAATAGAAAGGGGAAAAGGAGCAGTAAGATTGGGGATAGTTTGAAGCAGAGATTATTGGCTTTGGGAAGGGAGGTTCTGATGCAGAGATCGACGGTGGAGAGGCAGAGGAAGAAGTTGGGAGAGGAAGAACAAGCTGCAGTTTTATTGATGGCACTCTCTTATGGCTCTGTCTATGCTTAG 432 0.4861 MVDPSGKGSEAEEANARNPNGDSSEESPTMSEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGLNKGSSEDNNRKGKRSSKIGDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0850 143 MobiDBLite consensus disorder prediction 73 97 - -
Sto3g0850 143 Gene3D - 31 95 IPR013088 GO:0006355|GO:0008270
Sto3g0850 143 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Sto3g0850 143 CDD ZnF_GATA 36 89 IPR000679 GO:0006355|GO:0043565
Sto3g0850 143 PANTHER OS01G0976800 PROTEIN 1 143 - -
Sto3g0850 143 MobiDBLite consensus disorder prediction 16 40 - -
Sto3g0850 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 33 71 - -
Sto3g0850 143 MobiDBLite consensus disorder prediction 1 55 - -
Sto3g0850 143 SMART GATA_3 31 81 IPR000679 GO:0006355|GO:0043565
Sto3g0850 143 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Sto3g0850 143 PANTHER OS01G0976800 PROTEIN 1 143 - -
Sto3g0850 143 MobiDBLite consensus disorder prediction 82 96 - -
Sto3g0850 143 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0850 Sto-Chr3 5900543 5901185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0850 1 143 C2C2-Gata Transcription Factor Family AT3G06740 59.868 8.31e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto3g0850 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0850 - - zju:107433211 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0850 3 5900543 5901185 Sto3g0850 3 5900543 5901185 ECH
Sto3g0850 3 5900543 5901185 Sto8g0238 8 1606381 1607354 ECH