Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0844 ATGTCACTAGTTGTTGAAGAAGAGAATAGTTCATCAAAGGGAAGAGGTGGTGGTTGCTGTGACAAACTTGGTTTGAAGAAAGGACGATGGACTGCTGAAGAAGATCAAATCTTGACCCACTACATCCAACAAAATGGTGAAGGCTCTTGGAGGTCCTTGCCTAAAAATGCAgGATTATTGAGATGTGGGAAGAGTTGCAGACTGAGATGGATAAACTACTTGAGAGCAGACGTCAAGAGAGGAAACATCACTCCTCAGGAAGAAGCCATCATTGTCAAGCTTCATGCTGCTCTTGGTAATAGGTGGTCTGTAATAGCAGGTTATCTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAACTCTCATTTGAGAAGAAAAATCTATTGCTACATGAGACCCTCTGCCTCTAACGACTCCCTCCCACCCATTGACATGTCTTCTCTGAACCACCTTAAGCGAAGAGCCCCTCGAGGCAGACCTCCTCATCAATCCACCATGCAAGATTCTGCTTCCAACCACACCTCACACTACTCTGACGACGCCGTCGTCATGAACGCACACGAGGTGTTCGATAAAATGCCTCAAAGAAAACCCACCCCACAGAGCTGCAATATTAATAAAGCAGGGGAAGCAGAGGAGGACGAGTTTCCCATGATGGATTATTCTGATCAACATGCGGAAGTGTCCAATCCCATAATAACGAATGGGACTTGCAGTACTGTGAAGAATACCAGATGGACACTTGTTTGTGGGGTACTGCAAATGCTAATTTCCACTGAGTAG 789 0.4487 MSLVVEEENSSSKGRGGGCCDKLGLKKGRWTAEEDQILTHYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEAIIVKLHAALGNRWSVIAGYLPGRTDNEIKNYWNSHLRRKIYCYMRPSASNDSLPPIDMSSLNHLKRRAPRGRPPHQSTMQDSASNHTSHYSDDAVVMNAHEVFDKMPQRKPTPQSCNINKAGEAEEDEFPMMDYSDQHAEVSNPIITNGTCSTVKNTRWTLVCGVLQMLISTE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0844 262 Gene3D - 84 129 - -
Sto3g0844 262 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Sto3g0844 262 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Sto3g0844 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 193 - -
Sto3g0844 262 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Sto3g0844 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Sto3g0844 262 SMART sant 26 76 IPR001005 -
Sto3g0844 262 SMART sant 79 127 IPR001005 -
Sto3g0844 262 CDD SANT 84 125 IPR001005 -
Sto3g0844 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Sto3g0844 262 Gene3D - 24 80 - -
Sto3g0844 262 PANTHER MYB TRANSCRIPTION FACTOR 18 193 - -
Sto3g0844 262 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Sto3g0844 262 MobiDBLite consensus disorder prediction 155 177 - -
Sto3g0844 262 CDD SANT 29 74 IPR001005 -
Sto3g0844 262 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0844 Sto-Chr3 5865992 5869411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0844 19 140 MYB Transcription Factor Family AT2G47460 78.049 1.79e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto3g0844 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0844 K09422 - gmx:100795019 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0844 3 5865992 5869411 Sto3g0844 3 5865992 5869411 ECH