Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0803 ATGATTGGAACTGATGTTCGCGCGCTTTTCACCCCCTCAAGTGCGGTTCTACTCGAAAAGGCATTCAGGGCTCGGGAAATAACGCTGTTGAACCCCATTTGGATTCATTCTAAGAATTCGGGAAAACCCTTTTATGCAATTTTACATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCCAGAACAGAGGACCCTGCCCTGTCCATTGCTGGGGCGGTGCAGTCTCAGAAACTGGCGGTGCGTGCAATTTCGCAGTTGCAGTCGCTTCCTGGTGGAGATATTAAGCTTTTGTGTGATACTGTAGTTGAGAGTGTTAGAGAACTTACTGGGTATGACAGGGTAATGGTGTATAAATTTCACGAGGATGAACATGGGGAGGTTGTTGCTGAGAGTAAGAGACGGGACTTGGAGCCCTACATCGGATTGCACTATCCTGCAACTGATATTCCTCAGGCTTCAAGGTTCTTGTTCAAGCAGAACCGAGTTAGGATGATTGTGGATTGCCATGCCACTCCTGTTAAGGTAATTCAGGATGAAGCGCTTATGCAGCCACTGTGCTTGGTTGGATCAACACTTCGTGCTCCACATGACTGTCATGCACAGTATATGGCCAATATGGGATCTATTGCTTCATTGGCAATGGCAGTCATAATCAATGGGAATGACGAGGAAGGTCGTAACTCAATGAAGCTTTGGGGCCTGGTTGTTTGTCATCATACTTCTGCCCGATGCATTCCTTTCCCTCTACGCTATGCTTGTGAGTTCCTTATGCAAGCCTTTGGGCTCCAACTGAATATGGAACTTCAATTGGCATCACAATTATTGGAAAAACGAGTTTTGAGGACGCAGACTCTCTTGTGTGACATGTTGCTTCGAGACTCTCTTACTGGCATTGTTACTCAGAGCCCTAATGTTATGGACCTTGTGAAGTGTGATGGAGCAGCTCTCTACTACCAAGGTAACTACTACCCATTAGGTGTCACCCCTACCGAGTCCCAAATAAAGGACATTATAGAGTGGCTGTTAGCCAGCCATGGGGATTCAACAGGTTTAAGTACTGATAGTCTGGCTGATGCTGGGTATCCCGGAGCTGCCTCTCTTGGTGATGCAGTATGTGGGATGGCTGTTGCTTATATCACAGAAAGGGTTTACCTATTCTGGTTCAGATCTCATACagcaaaagaaattaaatgggGTGGTGCAAAGCATCACCCTGAGGACAAGGATGACGGACAGAGAATGCATCCACGTTCTTCATTTAAGGCATTTTTAGAAGTGGTAAAAAGCCGTAGTTTACCATGGGAGAATGCAGAGATGGATGCTATACACTCTTTGCAGCTTATTTTGAGAGACTCATTTAGAGATGCTGAGCAAAACAATTCTAAGGCTGTTGTGCATTCTCAACTTGGGAATCTAGAGTTGCAAGGGGTGGATGAGTTGAGTTCTGTAGCTAGAGAAATGGTTAGATTGATAGAAACTGCTACTGCTCCCATATTTGCTGTAAATGTGGAAGGCTGCATAAATGGCTGGAATGCAAAGGCTGCAGAATTGACAGGTCTCTCAGTTGAGGAAGCTATGGGGAAGTCCTTGGTCCATGATATTGTGTATAAGGAGTCTGAAGAAACTGTAGACAAGCTTCTTTCTCGTGCTTTAAGAGGTGAAGAAGACAAGAATGTAGAAATAAAGATGAGGACATTTGGCCCAGAACAGAATAAGAAGGCAGTTTTTATAGTGGTAAATGCTTGCTCTAGCAAGgattatacaaataatatagTTGGAGTATGCTTTGTTGGTCAAGATGTTACTGGTCAAAAAGTAGTAATGGACAAATTCATTCACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCGTTAATCCCTCCCATTTTTGCCTCAGATGATAACACATGCTGCTTAGAGTGGAACGCTGCCATGGAAAAACTTACCGGTTGGAGCCGTGAGGATGTCATTGGAAAAATGCTGGTAGGAGAGGTTTTTGGTAGTTGCTGTCGACTGAAGGGTCCAGATTCTCTAACCAAGTTCATGATTGTCTTGCACAATGCACTTGGTGGACAGGATACAGATAAATTCCCCTTTTCATTCCTTGATCGGCATGGAAAATATGTGCAAGCACTCCTTACCGCTAATAAGAGGATTAATGTGGACGGACAAATTATTGGGGCTTTCTGCTTTTTGCAAATTGCAAGTCCGGAACTTCAACAGGCTCTGAAAGTCCAGAGACAACAGGAGAAGAAATGCTTCGCTAGGATGAAAGAATTAGCTTACATTTGTCAGGAAATAAAGAATCCTTTGAATGGCATTCGCTTTACAAACTCTCTGTTGGAAGCCACAGACTTGACTGATGATCAAAAACAATTTCTTGAGACTAGTACAGCTTGTGAGAAGCAGATGTTCAAGATAATACGAGATGTAAATCTGGAGAGTATTGATGATGGGTAA 2475 0.4319 MIGTDVRALFTPSSAVLLEKAFRAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRRDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVKVIQDEALMQPLCLVGSTLRAPHDCHAQYMANMGSIASLAMAVIINGNDEEGRNSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRDSLTGIVTQSPNVMDLVKCDGAALYYQGNYYPLGVTPTESQIKDIIEWLLASHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITERVYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEQNNSKAVVHSQLGNLELQGVDELSSVAREMVRLIETATAPIFAVNVEGCINGWNAKAAELTGLSVEEAMGKSLVHDIVYKESEETVDKLLSRALRGEEDKNVEIKMRTFGPEQNKKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNAAMEKLTGWSREDVIGKMLVGEVFGSCCRLKGPDSLTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQALLTANKRINVDGQIIGAFCFLQIASPELQQALKVQRQQEKKCFARMKELAYICQEIKNPLNGIRFTNSLLEATDLTDDQKQFLETSTACEKQMFKIIRDVNLESIDDG 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0803 824 SUPERFAMILY PYP-like sensor domain (PAS domain) 633 737 IPR035965 -
Sto3g0803 824 ProSitePatterns Phytochrome chromophore attachment site signature. 195 204 IPR013516 -
Sto3g0803 824 Gene3D PAS domain 483 607 - -
Sto3g0803 824 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 95 260 IPR016132 -
Sto3g0803 824 Pfam His Kinase A (phospho-acceptor) domain 764 824 IPR003661 GO:0000155|GO:0007165
Sto3g0803 824 Gene3D - 741 822 - -
Sto3g0803 824 Gene3D PAS domain 1 198 - -
Sto3g0803 824 SMART HisKA_10 760 824 IPR003661 GO:0000155|GO:0007165
Sto3g0803 824 Pfam PAS fold 2 62 IPR013654 GO:0006355
Sto3g0803 824 SUPERFAMILY GAF domain-like 278 455 - -
Sto3g0803 824 CDD HisKA 760 816 IPR003661 GO:0000155|GO:0007165
Sto3g0803 824 Pfam Phytochrome region 283 457 IPR013515 GO:0006355|GO:0009584
Sto3g0803 824 CDD PAS 630 738 IPR000014 -
Sto3g0803 824 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 823 - -
Sto3g0803 824 PANTHER PHYTOCHROME 2 823 - -
Sto3g0803 824 ProSiteProfiles PAS repeat profile. 619 671 IPR000014 -
Sto3g0803 824 Gene3D - 275 448 IPR043150 -
Sto3g0803 824 Gene3D - 76 431 IPR029016 -
Sto3g0803 824 Pfam PAS fold 488 603 IPR013767 GO:0006355
Sto3g0803 824 Pfam PAS fold 619 738 IPR013767 GO:0006355
Sto3g0803 824 CDD PAS 496 603 IPR000014 -
Sto3g0803 824 SMART gaf_1 95 280 IPR003018 GO:0005515
Sto3g0803 824 SUPERFAMILY PYP-like sensor domain (PAS domain) 492 600 IPR035965 -
Sto3g0803 824 SUPERFAMILY PYP-like sensor domain (PAS domain) 2 65 IPR035965 -
Sto3g0803 824 SUPERFAMILY GAF domain-like 75 267 - -
Sto3g0803 824 SMART pas_2 487 554 IPR000014 -
Sto3g0803 824 SMART pas_2 618 688 IPR000014 -
Sto3g0803 824 Pfam GAF domain 95 270 IPR003018 GO:0005515
Sto3g0803 824 PRINTS Phytochrome signature 10 32 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 110 129 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 195 216 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 300 320 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 385 404 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 418 436 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 488 504 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 507 522 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 581 598 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 PRINTS Phytochrome signature 601 621 IPR001294 GO:0006355|GO:0009584
Sto3g0803 824 ProSiteProfiles PAS repeat profile. 485 556 IPR000014 -
Sto3g0803 824 TIGRFAM sensory_box: PAS domain S-box protein 492 607 IPR000014 -
Sto3g0803 824 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 751 816 IPR036097 GO:0000155|GO:0007165
Sto3g0803 824 Gene3D PAS domain 632 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0803 Sto-Chr3 5578201 5581271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0803 2 824 Histidine Kinase Gene Family AT2G18790 81.633 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0803 K12121 - qsu:111989006 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0803 3 5578201 5581271 Sto3g0803 3 5578201 5581271 ECH