Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0785 CTGGATAGGGACAGAAGAGACCGCTATGGCAGCTCTGCCTCTCATCAATCTCGTCACTCCAGGGGTCCCTCTCGTTTCTCCGATGATCCCTTCACCTATAACAACGCCACGCGCAGCCctagtaactcccgctctgctGGCGCCGGAGCCAACCACCGTCCACTGGACACTCCGCCGCGTCGGTCTCCTGGCAGAGGTGGAAGCTTCCGCCCACTGGCTGCTCCCGGTGGATTTGGGTTTAACAGTCATTCGGTGCCACCACTGTCCGGGCAGAAGCGAGGCTTTTCCTTTCCTGGGCGTGGAGGGTTGCCAGTTTTGCTTCAGCGGCAGTGGGGAACCTGGGAATTCATTGAGTATCATTTTGATGGTAGAAGTTTTGCGAAACTTTTTGTTGGATCTGTTCCCCGGACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAATGTGATCGAGGTTGCTTTGATCACAGATAAAAAAACTGGACAACAACAAGTTGGGTTGACTGGATATGGTCATATGGATGGTTGTTGTTTTATTAAGTATGCTACTCCTGAAGAAGCTGAGCAAGCAATTAGAGCGTTGCATAATCAATATACCCTTCCTGGAGGCGTAGGTCCAATCCAAGTGAGATATGCTGATGGAGAACGGGAACGCCTTGGTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACAGTATCTGAAGTTGAGGAAATTTTCTCAAAATATGGGCGTGTTGAAGATGTTTATCTTATGCGTGATGAGATGAGGCAAAGCCGTGGATGCGGTTTTGTTAAATACTCTCAGAGAGATACGGCACTGGCTGCTATACATGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCAACCATTAACTGTTCGGTTTGCTGATCCAAAGAGACCTCGGCAGGGAGACTCAAGGGGTTCTTCATTTCCCCGTCCAGCATTTGATCCTAGACTTGAAGCATCTGTCCTATGTCCTCCATCCAATTTTAATGATCCGATGGGTGATCATTTCCCTCTTCCAAATGCTTGGCGTCCAATGCATATGCCAAATGTGGGACCTTCCTCTAATGCTGGTCCTCGTGGCATGGAGCCTCTATTGCTTCCAAGATCTGCTGGCCCAGCAATGCCTATTAACACAggtgGTCCTATGACTGGCTTTGGAGGCCCAATAGATGGTCCTTTCCAAGGGCAGGCTTTTCCATCAATGTCACAACAGAATTTCAGCCAGACAATCCCACAAATTCCACTAGTCGGCCAACAAATATCATCATTGAAGAAACCTATGCAGTCACATCAGGATTTGCCACCTTCCCTCCAGTTGTATCCTCAGGCTCCAATGCCCCACTTACAAACACCAATGTTCCTTTCATCAATTAGGCAGGTTGGCCAGCCACAACTTCCTTCATCTGGGGATCCTATTCCTTCACAGCAGTTACCTGAGTCCCAGAATCAAGCTCAGCAGAATGCTTTGTTTGTTGCAATGTCTCCGAGCTCTTTTGATGCCAACTTGCAATCCAGTATGGCATTAAATACTGCAAATCAGCAGCAACTTCCTGTCACTGTGCGGCAGCAGCCACTTCAGCAGTCTCCATCACAGTTGGCCCAAATGTTATCACAACAAACTCAGACATTGCAAGCCAGCTTCCATTCATCCCAGGCGGCCTTTTCCCAACTTCAACAGCAAGTACAGACGATGCAACCGCCTATTCAAGATTTAGCATTGCAGCAAAATGCAGAAGCTGCTAAGAAGCAGTCTCAATGGGCTGGGACTGTAATGTTGGCAGAGAGGAGCACCCGGGTTGCTGCACCAGTTGCAGATGTGCCTTCATCCTCATCTGCCGCTTCTGTTATACCCGCAATAAACCAGAGCATTGCCCTCGGAAAATGCAATTGGACAGAACATACATCTCCTGAGGGCTTCAAGTATTACTACAATAGTGTCACTTGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGATATTATTTGAAAGGCAAAAGCAACAGCAAATGCCATTAATTCAACAGTCTCAAACTCAACCACCACCAATTTCATCTAACCAGCCAGCTCCACAATTGCAACAGTTGCTGCCTCAAGGTCAATTACATATTCTCCACCAGCAACAAGTACAGCAGCCTTTGTCTTCTTCAGCATCCGGAGCTACAGGTCATCAAAATGTTCAGGAAGTTGGTAATGCACAGTTACAGACATCAAGTATATCTGTTGGTGATCCTGCACGCTTCCCACAGGGGATTCATGCTACACAAGAGtggatGGTAGGATTTTGCATGCTACATCTGAGAGTTACCGGCAACTGTCAAACCCCCTTGCCCAACCTGCCACAGGATGCCCTCCAAAAAAGGGTCAAAAGGGATCGAATCCATCAAATAgtcatgatttttctttttgatagGAAATTGAACTCTTATGGACTTGGCTTATGGGAGGTGGCAAATAGGGACGATGCTGATAGGCAAAGAGGAGAGGGAATTCATAAACCTTTCTCTCTAGTCTTTTCAAGTGATGATGCTTCTCTAAACCCTGTTTCAACATGCTTCAATCATAATGTTTTACGCTGGATGGATAAGATTGGCAATAACCAAACAGGGCCTAAGGTGCCAATTGGTGCTCAACTTTTTAAACCTGAAAATTTTCTTACAAGTCATATGATATGA 2709 0.4585 LDRDRRDRYGSSASHQSRHSRGPSRFSDDPFTYNNATRSPSNSRSAGAGANHRPLDTPPRRSPGRGGSFRPLAAPGGFGFNSHSVPPLSGQKRGFSFPGRGGLPVLLQRQWGTWEFIEYHFDGRSFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALITDKKTGQQQVGLTGYGHMDGCCFIKYATPEEAEQAIRALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVSEVEEIFSKYGRVEDVYLMRDEMRQSRGCGFVKYSQRDTALAAIHALNGIYTMRGCDQPLTVRFADPKRPRQGDSRGSSFPRPAFDPRLEASVLCPPSNFNDPMGDHFPLPNAWRPMHMPNVGPSSNAGPRGMEPLLLPRSAGPAMPINTGGPMTGFGGPIDGPFQGQAFPSMSQQNFSQTIPQIPLVGQQISSLKKPMQSHQDLPPSLQLYPQAPMPHLQTPMFLSSIRQVGQPQLPSSGDPIPSQQLPESQNQAQQNALFVAMSPSSFDANLQSSMALNTANQQQLPVTVRQQPLQQSPSQLAQMLSQQTQTLQASFHSSQAAFSQLQQQVQTMQPPIQDLALQQNAEAAKKQSQWAGTVMLAERSTRVAAPVADVPSSSSAASVIPAINQSIALGKCNWTEHTSPEGFKYYYNSVTCESRWEKPEELILFERQKQQQMPLIQQSQTQPPPISSNQPAPQLQQLLPQGQLHILHQQQVQQPLSSSASGATGHQNVQEVGNAQLQTSSISVGDPARFPQGIHATQEWMVGFCMLHLRVTGNCQTPLPNLPQDALQKRVKRDRIHQIVMIFLFDRKLNSYGLGLWEVANRDDADRQRGEGIHKPFSLVFSSDDASLNPVSTCFNHNVLRWMDKIGNNQTGPKVPIGAQLFKPENFLTSHMI 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0785 902 MobiDBLite consensus disorder prediction 682 702 - -
Sto3g0785 902 SUPERFAMILY WW domain 642 674 IPR036020 GO:0005515
Sto3g0785 902 MobiDBLite consensus disorder prediction 473 496 - -
Sto3g0785 902 Gene3D - 639 683 - -
Sto3g0785 902 SUPERFAMILY RNA-binding domain, RBD 110 222 IPR035979 GO:0003676
Sto3g0785 902 PANTHER TRANSFORMER-2-RELATED 85 739 - -
Sto3g0785 902 MobiDBLite consensus disorder prediction 304 326 - -
Sto3g0785 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 203 IPR000504 GO:0003723
Sto3g0785 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 296 IPR000504 GO:0003723
Sto3g0785 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 218 IPR000504 GO:0003723
Sto3g0785 902 SMART ww_5 638 670 IPR001202 GO:0005515
Sto3g0785 902 MobiDBLite consensus disorder prediction 27 48 - -
Sto3g0785 902 Gene3D - 121 223 IPR012677 -
Sto3g0785 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 308 IPR000504 GO:0003723
Sto3g0785 902 ProSiteProfiles WW/rsp5/WWP domain profile. 643 670 IPR001202 GO:0005515
Sto3g0785 902 MobiDBLite consensus disorder prediction 1 85 - -
Sto3g0785 902 CDD WW 640 670 IPR001202 GO:0005515
Sto3g0785 902 SMART rrm1_1 128 214 IPR000504 GO:0003723
Sto3g0785 902 SMART rrm1_1 229 304 IPR000504 GO:0003723
Sto3g0785 902 Pfam WW domain 642 668 IPR001202 GO:0005515
Sto3g0785 902 SUPERFAMILY RNA-binding domain, RBD 228 320 IPR035979 GO:0003676
Sto3g0785 902 Gene3D - 224 316 IPR012677 -
Sto3g0785 902 ProSitePatterns WW/rsp5/WWP domain signature. 643 668 IPR001202 GO:0005515
Sto3g0785 902 CDD RRM2_FCA 229 308 IPR034645 -
Sto3g0785 902 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 85 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0785 Sto-Chr3 5441832 5453614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0785 125 314 Eukaryotic Initiation Factors Gene Family AT1G71770 25.728 4.53e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0785 - - gmx:100786792 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0785 3 5441832 5453614 Sto3g0785 3 5441832 5453614 ECH