Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0747 ATGCGTGACGTTTCAGGCATATCAAATCTTTCGgtgtattttaatataaattctttcgaCATCTCAAGTGATGTTAGAGCTAGGACCCTACCGGGCAATGATCCAATAGCAGAAGTACCAAAACCTCTAAAGAGTCCTGGAATACCATCATTTTTCAATATTTGCCGAGGACGGAAAAGCAATTATGTATTATGCGCATTGATTAACACTGGGATAAGAACCATTGAAACAAACGCTTGCAATTCCACTCCGAAGCACATAATAGACATGGCAACAGCAGAGGCAGCTCCTGCTGCTCTTGGTCCACGATATGCACCTGATGATCCCACTCTTCCAAAACCTTGGAAGGGATTGATTGATGGGAGCACAGGTCTATTATACTATTGGAATCCTGAAACTAACATTACCCAATATGAAAAGCCTACTGCATTGCCACCACCCTTGCCTACAGGCCCACCTCCTGCAGTTTCTACACCAAAGCTGGCTCCCATACCAGTTGCTCATTCAATGCCACCCGGTGGGATTGTGACACAGCATGGACAGCAGTTAGTACAAGCCTCTCACCAACAGGGACAGCAAGTGAGCAGCCTATCCCATCAGCATGGACAAACGATGCCACAACAGCAGAGTCCCCAGGTACCACAGGCCACTCAGCAGCAGCCTTCTCAAGTGTCACAAGTTGGACAGCAACAGAGTTCACAGCCACAACCAGGTTTGCAGCAAGTCAGACAGCAAATGTTGCAGCCTCTGGGTCAGCAAATGCCGCAGCAGCAAAGTCAGCAATTGCATCATCAGATACCACAACAAGCCATCCAGTCACAACATTTTGGGCAAGGAGCCTCCCAAGATCATGGTTCATATATGGTACAGCCACAAGCACATCAATTCACTCACCAGAACCCACATTACATGTCATATTCACCAAACATGCTTTCATCTGGGCCGCAAAGTTCCCAACAGATTCAGCATAACACACATAGTCAGCCATTGGACAATCAACAGGAGTTTAAAGCAGCATTCCCAAAGATAGAGGAAGTAGATTTTAAAAATGGAAGCCAAGTACGACTTTCGCCATCCCAGTATCAACAAAAGAGTGCATTGTCTGTTCAAAACAGTCAGAACATTCCTGCTGGAATAAATTCTGTCCAGGTGCCACGTATGGGTGTTAATACTGGCCAACCGCATCAGTTTGGTGGTGTATCAGGCACTATGCTACAACCTTCTTCAGCAATGCATTCACAGCAGGGTAGCTCCGATTTAGTTTATCAACATGGTCATAGCTTTCAAAACCCAATGGGTCCAGGAATGGTGCATGGTCAGCCATCTAATGTCCATCCTGGTGACGTAAAGATGGGGCATGAAGATAATTTACGTGGTAGAGCTGTGAATGAATATTACTACAACTCTAGCAAAGAGGTGCCGGCAATGGGTTCTCAGCCACCAAATATTGCACCAATACCCAATTCAAGGAATCAGCagGATATGAGGATTGGCGGTTCCCCCTTTCAAAATGTAATGGCTGGTGGTAATGGGTTAAGTGGTATGCCAGGCCATGCTATGCATAATGCGTTTAATCCTCCACTGGGAGGACCTCCCCCACATGCAAGTAACTCTTTGCCGAGGCCTCATGTAACTGATCTCTCACCAGCTGAAGTTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGAAAATGTTCCTCCCCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATTTTGAGAGAGATATATTCTGCCGGTTTCTCAAGTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACGTTGGGTTATTTGATGCCTGCATTTATGATTCTTAGACAGCGGCGTAATAATTCTCTGAATGGCCCTACCGTATTGGTATTAGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAGGCAATTAAATTTGGCCGATCTTCGCGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGTGGAGCAGACATTGTTGTTGCTACACCTGGTCGCCTCAATGACATACttgaaatgaagaaaattgactttgggCAAGTTTCACTTCTTGTGCTTGATGAAGCTGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAACGAGATACCACCTCGCAGACAAACTCTCATGTACACGGCAACCTGGCCAAAAGAAGTACGGAAAATTGCTGGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACGCAGTATGTTGAGGTTGTTCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGTTCCACAAAAAGGTTATGTGATCAGCTTGCCCGTAGCATTGGCCGCAGTTTCGGTGCTGCTGCAATTCATGGAGATAAATCTCAAGGTGAAAGAGACTGGGTTTTAAATCAGTTTAGGACTGGGAAATCACCAGTTCTGGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATTAAGGATATAAGGGTTGTGATAAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGACGAACAGGAAGGGCTGGAGCCACTGGAGTGTCATACACCTTTATCTCTGAGCAGGACTGGAAACATGCAGGTGACCTAATCAAAGTTTTGGAGGGTGCTAATCAGATTGTGCCTCCAGAGTTACGACAGATGGCTTTGCGTGGACCAGCTAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGTTGGGAGGCTGGTGGCCGCGGTGGCATGAGAGATGGTGGCGGGTTTGGTGGTCGTGGTGGCAGAGATGGTGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGCGGTCGTGGTGGCATGAGGGATGGTCCTAGTGGGCAGGGTGGAAGAGGTGATTTCTTTTCCGGTAGGGGCAATAGGGGTCGTGGATTGGGTATCTCTCGTGGTGGTCAGGTTGGTTGGGGTAGGGGCGAACGTGGCCCTCATGATCGATACAACATGGATGGGCGAGGAAGAGGTCGTGGTCGTGGGCGGTTTGACAACAGAAGAGATGTTGCCCACAGGAGTAGAGGCAGGAGTTATAGTCGCAGCCCTGAAAGGATTTCTGATCAGAAAGATTTTCAGCAAAGAGAAATGGAAGCTTCTGAGCCTAGAATGTCTCCTAGCGTTGAGGGGAATTCACTTCAGGGAAACCATCGCATAGAGCAGCTACCAGCTGTTGAGAGGGCTGAGCCTGCTAATCCAGAGGCTATAGACCCTTGTCATCAATCAGATCCTAATATCTGA 3474 0.4663 MRDVSGISNLSVYFNINSFDISSDVRARTLPGNDPIAEVPKPLKSPGIPSFFNICRGRKSNYVLCALINTGIRTIETNACNSTPKHIIDMATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLPTGPPPAVSTPKLAPIPVAHSMPPGGIVTQHGQQLVQASHQQGQQVSSLSHQHGQTMPQQQSPQVPQATQQQPSQVSQVGQQQSSQPQPGLQQVRQQMLQPLGQQMPQQQSQQLHHQIPQQAIQSQHFGQGASQDHGSYMVQPQAHQFTHQNPHYMSYSPNMLSSGPQSSQQIQHNTHSQPLDNQQEFKAAFPKIEEVDFKNGSQVRLSPSQYQQKSALSVQNSQNIPAGINSVQVPRMGVNTGQPHQFGGVSGTMLQPSSAMHSQQGSSDLVYQHGHSFQNPMGPGMVHGQPSNVHPGDVKMGHEDNLRGRAVNEYYYNSSKEVPAMGSQPPNIAPIPNSRNQQDMRIGGSPFQNVMAGGNGLSGMPGHAMHNAFNPPLGGPPPHASNSLPRPHVTDLSPAEVYCQQHEVTATGENVPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFMILRQRRNNSLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQIVPPELRQMALRGPANFGKDRGGMSRFDSGGGRWEAGGRGGMRDGGGFGGRGGRDGGGFGGRGGMRDGGGFGGRGGMRDGPSGQGGRGDFFSGRGNRGRGLGISRGGQVGWGRGERGPHDRYNMDGRGRGRGRGRFDNRRDVAHRSRGRSYSRSPERISDQKDFQQREMEASEPRMSPSVEGNSLQGNHRIEQLPAVERAEPANPEAIDPCHQSDPNI 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0747 1157 CDD WW 112 140 IPR001202 GO:0005515
Sto3g0747 1157 Gene3D - 105 143 - -
Sto3g0747 1157 Pfam WW domain 111 141 IPR001202 GO:0005515
Sto3g0747 1157 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 722 730 IPR000629 -
Sto3g0747 1157 Gene3D - 781 951 IPR027417 -
Sto3g0747 1157 SUPERFAMILY WW domain 103 143 IPR036020 GO:0005515
Sto3g0747 1157 MobiDBLite consensus disorder prediction 142 160 - -
Sto3g0747 1157 SMART ww_5 110 143 IPR001202 GO:0005515
Sto3g0747 1157 MobiDBLite consensus disorder prediction 138 285 - -
Sto3g0747 1157 MobiDBLite consensus disorder prediction 1053 1109 - -
Sto3g0747 1157 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 571 599 IPR014014 GO:0003724
Sto3g0747 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 776 IPR014001 -
Sto3g0747 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 925 IPR027417 -
Sto3g0747 1157 MobiDBLite consensus disorder prediction 952 1157 - -
Sto3g0747 1157 Pfam Helicase conserved C-terminal domain 802 910 IPR001650 -
Sto3g0747 1157 CDD SF2_C_DEAD 790 919 - -
Sto3g0747 1157 Pfam DEAD/DEAH box helicase 595 765 IPR011545 GO:0003676|GO:0005524
Sto3g0747 1157 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 369 1040 - -
Sto3g0747 1157 MobiDBLite consensus disorder prediction 175 285 - -
Sto3g0747 1157 Gene3D - 547 780 IPR027417 -
Sto3g0747 1157 ProSiteProfiles WW/rsp5/WWP domain profile. 109 143 IPR001202 GO:0005515
Sto3g0747 1157 SMART helicmild6 826 910 IPR001650 -
Sto3g0747 1157 SMART ultradead3 590 793 IPR014001 -
Sto3g0747 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 805 949 IPR001650 -
Sto3g0747 1157 ProSitePatterns WW/rsp5/WWP domain signature. 115 141 IPR001202 GO:0005515
Sto3g0747 1157 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 369 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0747 Sto-Chr3 5137771 5148467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0747 569 948 Eukaryotic Initiation Factors Gene Family AT3G19760 34.121 3.79e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0747 K12823 - gmx:100807830 1330.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0747 3 5137771 5148467 Sto3g0747 3 5137771 5148467 ECH